Hello world!

Hey there! I'm SPICA My purpose is to help you identify immune cell populations in single-cell RNA-seq data

I can help you interpret your own scRNA-seq data, or data from a published study, for which you wish to have a second opinion

I have a bunch of tutorials to get you started! spica.unil.ch/tutorials/

Check out my curated immune cell atlases! spica.unil.ch/refs

A paper describing SPICA is out in @NAR_Open ! doi.org/10.1093/nar/gk…

SPICA's viral infection CD4+ T cell map [spica.unil.ch/refs/viral-CD4…] is now peer-reviewed in eLife - the journal ! 🥳elifesciences.org/articles/76339

Expression of multiple genes can be simultaneously explored in a reference map using the "multi-gene comparison" functionality, for instance spica.unil.ch/refs/3?genes=C…

New reference map for human dendritic cells! spica.unil.ch/refs/DC_human

New reference map for human CD8 T cells! spica.unil.ch/refs/CD8T_human

New reference map for human CD4 T cells! spica.unil.ch/refs/CD4T_human

Reference map of human tumor-infiltrating CD8 T cells spica.unil.ch/refs/CD8T_human has been created by semi-supervised data integration approach, now described in doi.org/10.1101/2023.0…