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"Most people die at 25 and aren't buried until they're 75" Why? 4 reasons and solutions:

Adíos Glasgow! Don’t think I’ll miss you 🙃🙃🤣🤣 #goodbye #travelblogger #jk

Beach boy is back! #holidays #travelblogger

Moving to Threads in 3, 2, 1…bye bye for good Twitter? #ThreadsApp #Threads

Single-cell multiplexing (hashing/genetics) is key for upscaling scRNA-seq. We introduce hadge, a Nextflow pipeline combining existing comp analysis methods with new metrics & rescue mode for efficient deconvolution. Led by F Curion, X Wu & Lukas Heumos. biorxiv.org/content/10.110…

Disease trajectories in hospitalized COVID-19 patients are predicted by clinical and peripheral blood signatures representing distinct lung pathologies. medrxiv.org/cgi/content/sh… #medRxiv

Interesting comparison of Xenium vs CosMx spatial molecular imagers data indicating which one performs better in the same set of samples. I always said “cell segmentation” is the most critical factor…#spatial #transcriptomics #ST

Happy to have contributed to the development another spatially-resolved single-cell atlas of the post-mortem lung also from another “underrepresented” population in studies of this kind. #spatial #biology #singlecellspatial #humancellatlas

Giotto Suite: a multi-scale and technology-agnostic spatial multi-omics analysis ecosystem biorxiv.org/content/10.110…

Playing with new tools for alignment and spatially-aware integration of adjacent sections and from different samples for multi-modal spatial omics. Benchmarks shows massive improvement over “traditional” spatially-unaware tools such as harmony #spatial #spatialomics #bioinfo

Now online! Mapping the cellular biogeography of human bone marrow niches using single-cell transcriptomics and proteomic imaging dlvr.it/T6Vv5L

Few lines on code and expression of 5K genes are imputed/predicted in a 1K-panel spatial transcriptomics dataset, with uncertainties leveraged in downstream analysis #spatial #biology #spatialtranscriptomics #bioinformatics

After cell segmentation, I find suitable normalisation methods for spatial transcriptomics data another step requiring further development in the spatial biology field. #spatial #transcriptomics #data biorxiv.org/content/10.110…

As a newbie analysing ST data in different tumour datasets, I find this study quite interesting when I’ve observed strong and diverse B-cell signatures in such tumours. #spatial #transcriptomics #tumour #biology #bcells

Great discussions last night presenting our spatial single-cell omics work in vivax malaria at the Brazilian Malaria Meeting. Now, time to fly to New Orleans for AsTMH #rnm#reuniao#nacional#malaria#astmh

So happy to have directly contributed to this effort and achievement! Find our spatial lung cell atlas in respiratory disease in an African population here: doi.org/10.1038/s41591… nature.com/articles/d4158…

Now I’m officially 🇬🇧🇬🇧🇬🇧 #british #citizen