👁️Early View Alert👉 M2WISH: a new whole-mount RNA in situ hybridization protocol allowing 3D cell resolution. M2WISH is based on MicroWave treatment and offers a high-yield homogeneous hybridization without cellular damage. More info 👇 doi.org/10.1111/tpj.16…

Great paper that creates a new GA biosensor and shows key role for GA signalling at the edges of organ primordia. Auxin gets the lion's share of attention at the apex, but the role of GA has been much less well understood. nature.com/articles/s4146…

#RNA Framework 2.8.8 is out! Several additions/improvements/bug fixes. Check it out: github.com/dincarnato/RNA… & see the CHANGELOG (raw.githubusercontent.com/dincarnato/RNA…) for the details! Now RNA Framework will notify you every time a new (even minor) update is available!

rm -rf *

Self-assembling patterns in nature occur at all scales, from the formation of galaxies to microscopic snowflakes. Just one drop of dye in alcohol over a bed of oil gives rise to a sea of evenly spaced droplets. An Inspiring visual for biologists, chemists, and physicists.

Now it's that simple to predict #RNA secondary structure with SQUARNA Python3 library: pip install SQUARNA import SQUARNA SQUARNA.Predict(inputseq="CCCGNRAGGG") Demo: github.com/febos/SQUARNA/… BioRxiv: doi.org/10.1101/2023.0… #science #bioinformatics

lr-kallisto: Long-read sequencing transcriptome quantification biorxiv.org/content/10.110…

RWRtoolkit: multi-omic network analysis using random walks on multiplex networks in any species biorxiv.org/content/10.110…

Allocater: Advancing mRNA subcellular localization prediction with graph neural network and RNA structure academic.oup.com/bioinformatics…

Excited to share our latest short review, written together with Steve L. Bonilla and Jonesy, on #RNA conformational ensembles. Check it out at: sciencedirect.com/science/articl…. Particularly proud of Figure 1!

CleanUpRNAseq: An R/Bioconductor Package for Detecting and Correcting DNA Contamination in RNA-Seq Data pubmed.ncbi.nlm.nih.gov/39189209/ #Rstats bioconductor.riken.jp/packages/devel… 🧬🖥️ github.com/haibol2016/Cle…

Global impact of unproductive splicing on human gene expression. #UnproductiveSplicing #GeneExpression Nature Genetics nature.com/articles/s4158…

Long-read RNA-seq demarcates cis- and trans-directed alternative RNA splicing. #AlternativeSplicing #LongRead #Sequencing bioRxiv biorxiv.org/content/10.110…

📢 Thermomorphogenesis community 📢 After a great in-person thermomorphogenesis meeting last week, our JC will resume with Daniel Maag (@qw3rtzu1op) presenting his preprint on thermosensing by AFC kinases! Looking forward to it!

Our latest research on position-dependent transcriptional regulatory sequences in plants is now published! 🌿 More details in our preprint tweet and in this thread! 👇 nature.com/articles/s4158… 📄🔍 (1/5)

Double dose of #MondayMotivation for any young, aspiring scientists out there 🧪💭 Because #science is for everyone and every aspiration 🌟🌈

Dr Prafull Salvi's lab has published a review in the International Journal of Biological Macromolecules highlighting the role of intrinsically disordered proteins in enhancing drought resilience in plants sciencedirect.com/science/articl… Department of Biotechnology

Good old Tiger Milk... Adding this to my CV without context.

Why are there intronic reads in your bulk RNA-seq data? You're not alone—it's common, and the reasons are more layered than you think. Let’s break it down. 🧵