ryanlayer (@ryanlayer) 's Twitter Profile
ryanlayer

@ryanlayer

Making science faster with algorithms. Assistant prof CU Boulder, Computer Science and BioFrontiers.

ID: 16649473

linkhttp://layerlab.org calendar_today08-10-2008 14:38:28

1,1K Tweet

1,1K Followers

280 Following

ryanlayer (@ryanlayer) 's Twitter Profile Photo

Plenty of time to get your {long-read | short-read | machine learning | genotype} x { SV | CNV | TE | SNV} method into the #bibm2022 workshop on Computational methods to characterize genomic variants using high-throughput sequencing data in Vegas, Dec 6-9 combioconference.github.io/bibm2022-works…

ryanlayer (@ryanlayer) 's Twitter Profile Photo

Our work on integrating population data into SV analysis can be found at github.com/ryanlayer/stix and github.com/ryanlayer/samp… If you missed the talk check out this recording youtu.be/TsekM1VjFrA #GI2022

ryanlayer (@ryanlayer) 's Twitter Profile Photo

You are in luck! BioFrontiers 💻🦠🧬🧪🧫💉📊📓 is hiring 2+ asst profs in any area, as long as it's interdisciplinary. Work with some truly impressive people like NSF Waterman awardee @DanLarremore NIH Pioneer @Sara_Sawyer_, HMMIs, NASs, nobel laureate, and, you know, me! jobs.colorado.edu/jobs/JobDetail…

ryanlayer (@ryanlayer) 's Twitter Profile Photo

Apps are open for Interdisciplinary Quantitative Biology #PhD Program at CU Boulder 🦬 BioFrontiers 💻🦠🧬🧪🧫💉📊📓 Learn both sides of #quantitative #biology with funded rotations through wet and dry labs among 11 departments. colorado.edu/certificate/iq…

Apps are open for Interdisciplinary Quantitative Biology #PhD Program at <a href="/CUBoulder/">CU Boulder 🦬</a> <a href="/BioFrontiers/">BioFrontiers 💻🦠🧬🧪🧫💉📊📓</a>  Learn both sides of #quantitative #biology with funded rotations through wet and dry labs among 11 departments. colorado.edu/certificate/iq…
ryanlayer (@ryanlayer) 's Twitter Profile Photo

Congrats to Murad Chowdhury! His #ASHG22 poster got a Reviewers Choice Award. Check it out for yourself how he is using population-scale data to improve samplot #SV visualization. PB2317 Thursday 10/27 3-445. github.com/ryanlayer/samp…

Congrats to Murad Chowdhury! His #ASHG22 poster got a Reviewers Choice Award. Check it out for yourself how he is using population-scale data to improve samplot #SV visualization. PB2317 Thursday 10/27 3-445. github.com/ryanlayer/samp…
Michael Schatz (@mike_schatz) 's Twitter Profile Photo

The jxtxFoundation for Open Science will award six scholarships for the CSHL Biology of Genomes meeting covering full conference registration to outstanding graduate students. Application deadline is February 6, 2023. For details: jxtxfoundation.org/news/2022-12-1… CSHL Meetings #bog23

ryanlayer (@ryanlayer) 's Twitter Profile Photo

My lab has open positions for developing innovative methods at cross roads of genomics, algorithms, and machine learning. Apply here jobs.colorado.edu/jobs/JobDetail… if you have your MS and here jobs.colorado.edu/jobs/JobDetail… if you have your PhD. Reach out to me directly if you have questions.

Dr Harriet Dashnow (@hdashnow) 's Twitter Profile Photo

I'm looking for talented postdocs and staff scientists/software developers to join my lab at CU Department of Biomedical Informatics (DBMI) If you're fascinated by #RareDisease genomics, #STRs and computational methods, please get in touch! I'm at #ASHG2023 this week, and happy to chat. #hiring

ryanlayer (@ryanlayer) 's Twitter Profile Photo

Excited about Michael Bradshaw's 1st 1st-author paper biorxiv.org/content/10.110… Mixed STRING & HPO. Used time-series learning to id co-clustered genes/traits that may explain unsolved cases. Tested on MyGene2 & Children's Hospital Colorado patients. Slick GUI at ryanlayerlab.github.io/BOCC/)

bioRxiv Bioinfo (@biorxiv_bioinfo) 's Twitter Profile Photo

Hypothesis Generation For Rare and Undiagnosed Diseases Through Clustering and Classifying Time-Versioned Biological Ontologies biorxiv.org/cgi/content/sh… #biorxiv_bioinfo

ryanlayer (@ryanlayer) 's Twitter Profile Photo

I am sad to be missing #GI2023, but please check out talks from Christopher and Kristen Schneider on Friday, posters #60 from Michael Bradshaw and #57 from Morteza Baradar on Thursday, and poster #178 from Xinchang Zhen and Fritz Sedlazeck on Friday.

CU Department of Biomedical Informatics (DBMI) (@cubiomedinfo) 's Twitter Profile Photo

Rare disease research is at the forefront of the DBMI's work. When Harriet Dashnow, PhD, (Dr Harriet Dashnow) joins our team this summer, she will focus on computational research, rare genetic disease, and the discovery of new causal variants. Meet Dr. Dashnow 👇 news.cuanschutz.edu/dbmi/harriet-d…

Owen Martin (@lepurplemartin) 's Twitter Profile Photo

1/n 🌟🐝🔥 New paper alert 🌟🐝🔥 "Embracing firefly flash pattern variability with data-driven species classification" with Chantal Nguyen , Raphael Sarfati , Dieu My Nguyen , M Iuzzolino, M Chowdhury, ryanlayer, Orit Peleg nature.com/articles/s4159…

1/n
🌟🐝🔥 New paper alert 🌟🐝🔥
"Embracing firefly flash pattern variability with data-driven species classification" with <a href="/nguyenchantal/">Chantal Nguyen</a> , <a href="/RaphaelSarfati/">Raphael Sarfati</a> , <a href="/DieuMyNguyen/">Dieu My Nguyen</a> , M Iuzzolino, M Chowdhury, <a href="/ryanlayer/">ryanlayer</a>, <a href="/oritpeleg/">Orit Peleg</a> 

nature.com/articles/s4159…
Orit Peleg (@oritpeleg) 's Twitter Profile Photo

🌟 Proud to share a new paper on the flash pattern variability of fireflies! Our work, led by Owen Martin & Chantal Nguyen in collab with ryanlayer’s lab, offers new insights into species identification through ML data analysis: nature.com/articles/s4159… /1

bioRxiv Bioinfo (@biorxiv_bioinfo) 's Twitter Profile Photo

STIX: Long-reads based Accurate Structural Variation Annotation at Population Scale biorxiv.org/cgi/content/sh… #biorxiv_bioinfo

Fritz Sedlazeck (@sedlazeck) 's Twitter Profile Photo

How to annotated SV with pop. frequency? Using PacBio & Oxford Nanopore! Gnomad 32% & STIX: 95.9% of SV from Genome in a Bottle annotatable! Huge implications in SV filtering for eg: GREGoR Consortium & #cancer & #disease studies! Lead by xinchang zheng & ryanlayer biorxiv.org/content/10.110…

How to annotated SV with pop. frequency? Using  <a href="/PacBio/">PacBio</a> &amp; <a href="/nanopore/">Oxford Nanopore</a>! Gnomad 32% &amp; STIX: 95.9% of SV from <a href="/GenomeInABottle/">Genome in a Bottle</a> annotatable! 
Huge implications in SV filtering for eg: <a href="/GREGoR_research/">GREGoR Consortium</a> &amp; #cancer &amp; #disease studies!  
Lead by <a href="/wtoxzpw/">xinchang zheng</a> &amp; <a href="/ryanlayer/">ryanlayer</a> biorxiv.org/content/10.110…