Great talk by Pedro Baldoni looking at bootstrap replicates from salmon/kallisto and utilizing this variability in the context of differential transcript testing with edgeR #biocasia2022

Are you interested in spatial technologies and bioinformatics? We are advertising a joint position between Personalised Oncology and Bioinformatics, to be based in my lab at WEHI. Apply here: tinyurl.com/4979htaf

A method for stabilising the XX karyotype in female mESC cultures An #OpenAccess Research Article from Andrew Keniry, Marnie Blewitt Marnie Blewitt and colleagues WEHI (Walter and Eliza Hall Institute) journals.biologists.com/dev/article/14…

Want to help others in the Bioconductor community? The Working Groups are a great place to start: workinggroups.bioconductor.org #biocasia2022

Elijah Willie presenting FuseSOM for fast clustering of highly multiplexed in situ imaging cytometry at #biocasia2022 bioconductor.org/packages/relea…

Another incredible Bioconductor package #spectre to check out if you're dealing with single cell imaging and cytometry data. Presented by Giovanna Putri github.com/ImmuneDynamics…

2 great talks in a row from Belinda Phipson lab members at #biocasia2022 1. @Givanna90 presenting Spectre (github.com/ImmuneDynamics…) for analysing high dim cytometry and imaging data 2. Melody Jin showing us how estimate sex in scRNA-seq data with cellXY github.com/phipsonlab/cel…

First Indigenous Bioinformatics SIG as part of the National Indigenous Genomics Network. Super excited to be working with all these guys. Plenty of work to do

scPipe for #scATACseq data preprocessing from Shani Amarasinghe and colleagues #biocasia2022

Jianan Wang from the Speed Lab ⁦WEHI (Walter and Eliza Hall Institute)⁩ tells us about the CMDdemux method for dealing with #scRNAseq HTO data #biocasia2022

What a week! #ABACBS22, #COMBINE22, #SBEI2022 and Clinical Informatics. It’s been so good to see y’all again, I have lots of feelings & thoughts that I’m too tired to put into clear words. But I’d like to write some while it’s fresh. 1/6

Finally home wanted to send a big thank you to the organisers of #BiocAsia2022 (Peter Hickey). As a medically vulnerable person, it was a relief seeing so many session chairs, helpers and attendees wearing masks. This spoke volumes about the inclusive policies of the event.

Want a low-cost estimate of DNA methylation levels compatible with parallel transcriptomics in single cells and low-input samples (eg colonies, organoids)? Try our free-to-access protocol for scTEM-seq:

YES! PhD thesis submitted! #PhDone

We are advertising a 2 year postdoc position to work on data from cutting edge spatial technologies. This is a joint position with Marie-Liesse Labat at WEHI. Level A6-A8 (AUD $93,415 – $100,270). More details here: wehi.wd3.myworkdayjobs.com/en-US/WEHI/job…

Benchmarking single-cell hashtag oligo demultiplexing methods biorxiv.org/cgi/content/sh… #biorxiv_bioinfo

BioC Asia 2022 presentations are now available for viewing on YouTube: youtube.com/playlist?list=… Bioconductor #rstats

We're advertising for a Bioinformatics Research Assistant to work with me at WEHI (Walter and Eliza Hall Institute) to process and analyse data from a range of single-cell and spatial 'omics technologies. Full details of the role & how to apply: wehi.wd3.myworkdayjobs.com/WEHI/job/Parkv…

Come work with the amazing Belinda Phipson (and me) at WEHI (Walter and Eliza Hall Institute) analysing data from Visium, Xenium, STOmics, MERSCOPE ... a whole raft of spatial omics techonologies! A great opportunity for methods development and to work in a supportive team