the weekly # ports -u # prt-get sysup

Pretty cool analysis of the cultural evolution of filled pasta (link.springer.com/article/10.100…). Gotta try them all...

"With Reviewers" 👍

Little turtle - B cell 🥰 #FluorescenceFriday

More info and apply: sites.utu.fi/tohtorikoulutu…

Morphing transition showing the open-close transition of the Campylobacter jejuni ATP-driven lipid-linked oligosaccharide flippase PglK (PDB codes: 5C73 and 5C76) #scivis #moleculart #sciart ChimeraX (bsky: chimerax.ucsf.edu)

Shall I start calling the GNU Compiler Collection (gcc.gnu.org) simply "Alanine"?

Another great source of scientific art for figures by NIH! bioart.niaid.nih.gov/bioart/279 🙏🏼✨

github.com/IanevskiAleksa…

🌲 New tutorial on sandbox.bio: Learn to build phylogenetic trees from closely related genomes using ska2. sandbox.bio/tutorials/ska2…

In press! Congratulations to Renata's group! doi.org/10.1387/ijdb.2… I am happy to have contributed (protein characterization and evolutionary selection, Fig 1B and C) to the paper!

(1/4) Thrilled to announce another major release of the HOCOMOCO motif collection, well-known for its silly name and rigorous approach to constructing and benchmarking DNA sequence motifs recognized by human and mouse transcription factors. hocomoco.autosome.org

ProToDeviseR is finally out!!! 🤩 A fantastic tool to draw rich protein topology schemes in a second, by my super talented postdoc Petar Petrov!! As usual from Izzilab, all in #rshiny! link.springer.com/article/10.118…

youtu.be/AmybHuVIw8U

ncbi.nlm.nih.gov/datasets/docs/…

doi.org/10.1093/bioinf…

CRUX 3.8 is out! crux.nu/Main/ReleaseNo…

github.com/arklumpus/Tree…

The ChimeraX 1.10 release candidate and daily builds can predict small complexes of proteins, nucleic acids and small molecules using Boltz on your Mac, Windows or Linux computer. rbvi.ucsf.edu/chimerax/data/…

Rijuta Lamba, Alexandra Naba, Valerio Izzi @valerioizzi and colleagues present MatriCom, a single-cell RNA-sequencing data mining tool to infer cell–ECM interactions. Highlight: journals.biologists.com/jcs/article/13… Article: journals.biologists.com/jcs/article/13… #OpenAccess