openmicroscopy (@openmicroscopy) 's Twitter Profile
openmicroscopy

@openmicroscopy

The Open #Microscopy Environment - #opensource #image tools. Project news, #imaging, #bigdata, #openscience stories & more. [OME logo TM Glencoe Software, Inc.]

ID: 15369506

linkhttp://openmicroscopy.org calendar_today09-07-2008 19:48:46

6,6K Tweet

3,3K Followers

351 Following

openmicroscopy (@openmicroscopy) 's Twitter Profile Photo

The very lively and intense OMERO.figure workshop organized by LCI Karolinska Institutet as a part of LCI MIcroscopy course ki.se/en/bionut/lci-… just finished. The recordings will be available soon on youtube.com/@Livecellimagi….

openmicroscopy (@openmicroscopy) 's Twitter Profile Photo

First OMERO workshop in Indonesia🙏. This is the beginning of an exciting collaboration between University of Dundee and @ugmyogyakarta. Thanks to Dr Ery and team for making it happen.

First OMERO workshop in Indonesia🙏. This is the beginning of an exciting collaboration between <a href="/dundeeuni/">University of Dundee</a> and @ugmyogyakarta. Thanks to Dr Ery and team for making it happen.
openmicroscopy (@openmicroscopy) 's Twitter Profile Photo

Strong start into the first day of the OMERO workshop at UGM. The OME Team went through basics of OMERO, OMERO.figure and QuPath extension of OMERO.

Strong start into the first day of the OMERO workshop at <a href="/UGMYogyakarta/">UGM</a>. The OME Team went through basics of OMERO, OMERO.figure and <a href="/QuPath/">QuPath</a>  extension of OMERO.
Fabian Theis (@fabian_theis) 's Twitter Profile Photo

Excited that SpatialData is out Nature Methods! With Oliver Stegle & Josh Moore labs, we introduce & implement a dataframework & fileformat for multimodal spatial omics, based on the openmicroscopy standard. Read at nature.com/articles/s4159… & try here spatialdata.scverse.org.

Excited that SpatialData is out <a href="/naturemethods/">Nature Methods</a>! With <a href="/OliverStegle/">Oliver Stegle</a> &amp; <a href="/notjustmoore/">Josh Moore</a> labs, we introduce &amp; implement a dataframework &amp; fileformat for multimodal spatial omics, based on the <a href="/openmicroscopy/">openmicroscopy</a> standard. Read at 
nature.com/articles/s4159… &amp; try here spatialdata.scverse.org.
Luca Marconato (@lucamarconato2) 's Twitter Profile Photo

1/7 Here is a technical update for the latest release of the #SpatialData package from last week. We thank the core developers and contributors for helping us refine the framework, and the users for the precious feedback and discussions. GitHub repository: github.com/scverse/spatia…

Josh Moore (@notjustmoore) 's Twitter Profile Photo

Looking for a way to share your spatial omics datasets? If you haven't checked out the #SpatialData article (link) or code (quoted tweetorial), now may be the time. #OMENGFF images🔬integrated with #AnnData tables 📑 all wrapped into #Zarr packages. 🥰 doi.org/10.1038/s41592…

Looking for a way to share your spatial omics datasets?

If you haven't checked out the #SpatialData article (link) or code (quoted tweetorial), now may be the time. 

#OMENGFF images🔬integrated with #AnnData tables 📑 all wrapped into #Zarr packages. 🥰

doi.org/10.1038/s41592…
openmicroscopy (@openmicroscopy) 's Twitter Profile Photo

Interested in #OMENGFF, #OMEZarr, bioformats, #OMERO, #openimagedata, IDR News, bioimage data repos, data sharing, #FAIR? Come to Dundee May 29-31 for #OME2024. openmicroscopy.org for info and registration.

IDR News (@idrnews) 's Twitter Profile Photo

New 13 TB study publicly available in IDR!  The study has 14 organisms, 13 of which are new to IDR. Released ahead of its publication - Estimating essential phenotypic and molecular traits from integrative biodiversity data from Peters at al. idr.openmicroscopy.org/search/?query=…

New 13 TB study publicly available in IDR!  The study has 14 organisms, 13 of which are new to IDR.

Released ahead of its publication - Estimating essential phenotypic and molecular traits from integrative biodiversity data from Peters at al.
idr.openmicroscopy.org/search/?query=…
openmicroscopy (@openmicroscopy) 's Twitter Profile Photo

Great meeting #OME2024. Very helpful discussions, progress in #OMENGFF, #OMEZarr, new workflows in bioformats, spreading of #OMERO worldwide continues! See you next year at OME2025! Stay tuned for details and location! #openimagedata, IDR News

Great meeting  #OME2024. Very helpful discussions, progress in  #OMENGFF, #OMEZarr, new workflows in <a href="/bioformats/">bioformats</a>, spreading of  #OMERO worldwide continues! See you next year at OME2025! Stay tuned for details and location!  #openimagedata, <a href="/IDRnews/">IDR News</a>
openmicroscopy (@openmicroscopy) 's Twitter Profile Photo

OME Team presented an #IDR lightning talk and poster, plus two #OMERO workshops, at European Light Microscopy Initiative 2024 meeting in Liverpool. Thanks all for helpful questions and great feedback. Great to see #OMERO in many presentations on FacilityManager Day.#openimagedata,IDR News #OMENGFF,#OMEZarr

openmicroscopy (@openmicroscopy) 's Twitter Profile Photo

Getting ready for another workshop... This time we are at The Smithsonian Tropical Research Institute in Panama Smithsonian Panama. Looking at very exciting prehistoric plants. Thanks for having us

Getting ready for another workshop... This time we are at The Smithsonian Tropical Research Institute in Panama <a href="/stri_panama/">Smithsonian Panama</a>. Looking at very exciting prehistoric plants. Thanks for having us
openmicroscopy (@openmicroscopy) 's Twitter Profile Photo

Join the 3rd Get Your Brain Together Hackathon to advance #OMEZarr spatial transformations! Fri., July 26th - Sun., July 28th, 2024 Registration free! Hybrid event at UNC-Chapel Hill via Google Meet, bit.ly/imagesc-island, & bit.ly/imagesc-chat zarr.dev/blog/get-your-…

openmicroscopy (@openmicroscopy) 's Twitter Profile Photo

The OMERO installation workshop at #foundingGIDE event at RIKEN in Kobe was followed by the "Imaging workflows in OMERO" workshop. The participants had the satisfaction of installing OMERO on a VM. A lively discussion ensued on Monday 4th November here in Kobe.

The OMERO installation workshop at #foundingGIDE event  at <a href="/riken_en/">RIKEN</a> in Kobe was followed by the "Imaging workflows in OMERO" workshop. The participants had the satisfaction of installing OMERO on a VM. A lively discussion ensued on Monday 4th November here in Kobe.