Version 3.8.3 of cytoscape released on npm npmjs.com/package/cytosc…

Thank you to all students and mentors who helped make @gsoc Google Summer of Code 2019 a success! We had 6 projects ranging from visualization prototypes (#clonalevolution #pathwaymapper OncoKB™), to data import pipelines (#CPTAC #GDC) and backend optimizations (#spark #parquet).

Version 4.1.0 of cytoscape-cose-bilkent released on npm npmjs.com/package/cytosc…

September 2019 WikiPathways update: 905 edits by 15 contributors and 5 new pathways in the last month. Accessible via #webservices and in PathVisio and @Cytoscape. wikipathways.org/index.php/Down… #bioinformatics #openscience #opensource

Check out our latest V70 data release! New pathways & reactions w/ new & updated proteins, small mols, drugs & literature citations. Fully integrated w/ #webservices, #PathwayBrowser & #graphdatabase. #dataviz #dataanalyisis #genomics #biology #opendata

Announcing Newt 2.0 with many exciting new features such as SBML and SIF view support, faster layout, semantic validation of PD maps, persisting user preferences, flexible infobox positioning and styling, map color schemes with background images newteditor.org

Check out basics of our web based pathway editor Newt 2 in this tutorial: youtu.be/c79mU_8uXKk #sbgn #sif #pathways #diseasemaps Newt Pathway Editor OHSU News

Version 12 of Pathway Commons is online! Over 5 700 pathways, 2.4 million interactions from 22 sources. #pathways pathwaycommons.org

New repo sharing our ongoing CC0 work to extract pathway knowledge from published figures and its intersection with #COVID2019 articles collected in the #CORD19 dataset by Ai2 w/@nlm_news, CZI Science, et al. 4841 genes in 223 pathway figures so far! github.com/wikipathways/c…

A library and service for bidirectional conversion between CellDesigner and SBGN formats #sbgn #celldesigner Newt Pathway Editor SBGN CS@Bilkent doi.org/10.1093/bioinf…

Newt was updated to include some new exciting features including experiment data overlay. Check it out at newteditor.org. SBGN CS@Bilkent

A modified version of a Covid-19 pathway produced by the ongoing COVID-19 Disease Map project COVID-19 Pathways and converted into SBGNML by Augustin Luna as displayed in editable form in Newt Pathway Editor web.newteditor.org/?URL=https://r…

The COVID-19 Pathways project also connects content from many involved resources. Here is the conversion scheme that we are working on:

5th Disease Maps Community Meeting. 12-14 November 2020 The 2020 community meeting is dedicated to the COVID-19 Disease Map project and is organised as a web conference. disease-maps.org/events (more info soon)

A new version of the file format SBGNML for the graphical representation of biological networks is now available at degruyter.com/view/journals/… @DeGruyterOA

Newt tutorial starting in half an hour @ Combine 2020 Newt Pathway Editor SBGN Join via meet.google.com/ryf-bwec-nia

Student application period for GSoC 2021 ends on April 13! Cytoscape is participating as part of NRNB.org. Join us this summer to work on #opensource #openscience #netbio projects. summerofcode.withgoogle.com/organizations/…

Can Alpay will be working on automatic conversion of SBGN PD maps to AF maps for Newt Pathway Editor this summer as part of @gsoc supervised by Alexander Mazein SBGN

@Guruji_Panks will be working on providing local database support for SBGN maps in Newt Pathway Editor this summer as part of @gsoc supervised by ugurdogrusoz SBGN Neo4j

First publication on a rather mature pathway editor Newt Pathway Editor. Congrats to all who contributed including Hasan Balcı Alexander Mazein Ozgun Babur emekdemir ugurdogrusoz SBGN doi.org/10.1093/bioinf…