LoG Conference 2024 is back !!!👉 We are looking for more reviewers! We have a special emphasis on review quality via monetary rewards, a more focused conference topic, and low reviewer load (max 3 papers). But for this we need your help! Sign up here: forms.gle/Nuff4ndVZDFTis…!

Unfortunately can't join in-person ICML Conference 🇦🇹 but our awesome co-author Alex Morehead (何聪) will be there!!! Check out our Oral presentation @ SPIGM Workshop on 26 July and Spotlight poster AI for Science Workshop on 27 July ✨🥳 See our poster + schedule below 👀👇🏻

At ICML Conference this week where I'm presenting PoseBench at the AI4Science workshop as a spotlight. I'll also give an oral presentation on RNA-FrameFlow at the SPIGM workshop (AI4Science spotlight as well!) on behalf of many amazing collaborators including Rishabh Anand and Chaitanya K. Joshi.

PoseBench v0.5.0 is now released, featuring (1) docking results with AlphaFold 3's predicted protein structures, (2) Chai-1's benchmarking results, and (3) support for running exhaustive HPC benchmarking sweeps. 🧪 Paper: arxiv.org/abs/2405.14108 Code: github.com/BioinfoMachine…

Excited to release FlowDock, an all-atom flow matching model for generative protein-ligand docking and affinity prediction (ranked as a top method in CASP16)! Paper: arxiv.org/abs/2412.10966 Code: github.com/BioinfoMachine…

v0.6.0 of PoseBench is now available, featuring (1) results for AlphaFold 3, the new PLIF-WM metric, and (3) the new DockGen-E dataset of challenging docking targets. See the GitHub release below for more details. Paper: arxiv.org/abs/2405.14108 Code: github.com/BioinfoMachine…

Delighted to announce that FlowDock has been accepted to ISMB 2025. See you all in Liverpool! Paper: arxiv.org/abs/2412.10966 Code: github.com/BioinfoMachine…

🔬Interested in training AlphaFold3 faster, at scale, and beyond NVIDIA GPU? Now you can. AlphaFold3 is a major leap in biomolecular modeling, but behind the scenes, it introduces severe system bottlenecks: 🧠 2D EvoAttention spikes memory usage 📉 Retrieval-augmented training

Interested in learning more about how flow matching has begun to advance bioinformatics and computational biology? And how it has already started making strides towards the development of an AI-based virtual cell? Paper: authorea.com/users/637193/a… Code: github.com/amorehead/awes…