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Andrew White 🐦‍⬛ you asked me the other day about ontologies. This, from folks at Monarch Initiative, is a great example of how useful they can be as a cookie-cutter to an LLM. github.com/monarch-initia…

Interesting use of GPT to build structured knowledge bases from unstructured text using Large Language Models. ⁦Chris Mungall⁩ et al monarchinit.medium.com/spires-buildin…

TOMORROW! Don't miss Mónica Muñoz Torres, PhD @monimunozto.bsky.social's presentation about Monarch Initiative's data reuse practices as part of the session “Connecting Phenotypes and Genotypes Using Data Science”, Apr 25 1:15–2:00pm ET. Free registration: us06web.zoom.us/webinar/regist…

Find the link to Chris Mungall's SWAT4HCLS 2023 conference Keynote on our Mastodon account here: genomic.social/@monarch_initi…

The Monarch Initiative Biolink Model Brings Data Together! Find out more about our top 3 most downloaded papers in 2022 from the journal ASCPT here: ascpt.org/Journals/CTS/T… #BiolinkModel #TeamScience #Collaboration #RareDisease #DrugRepurposing #TranslationalScience LinkML - Linked (Open) Data Modeling Language

#Exomiser ranks potential rare Mendelian disease-causing #variants from whole-exome or whole-genome sequencing data. Learn more here: youtu.be/tzwvWkb3s8A #RareDisease #OpenScience #BigData #Collaborative #TranslationalScience #Disease #Genomics #Healthcare

Are #LLMs capable of interpreting the results of high-throughput genomics experiments? Given a list of genes (e.g. all genes over expressed under a certain condition), can an LLM tell us what those genes have in common, suggesting underlying biological mechanisms? 🧵

Monarch’s very own Nicolas Matentzoglu is nominated for the Excellence in #Biocuration Advanced Career Award through Int Soc Biocuration! Voting is open today through 6 June 2023! biocuration.org/excellence-in-… #careerexcellence #weareproudofyou

This work would not have been possible w/o the incredible effort of the model organism databases (Mouse Genome Info, ZFIN, FlyBase, wormbase, & SGD Project @[email protected] (bsky too)) and pan-species resources like Alliance of Genome Resources and Monarch Initiative. [13/n]

Join us in celebrating our new #collaboration with the Critical Path Institute (C-Path)! Learn more about our work to improve #drugdiscovery for #rarediseases here: link.medium.com/Qkc22sufjAb #teamscience #translationalscience #healthcare

The OntoGPT framework and SPIRES tool by Chris Mungall 's team provide a principled approach to extract knowledge graph from unstructured text using GPT. Here is my impression. apex974.com/articles/ontog…

We added a howto guide to the LinkML - Linked (Open) Data Modeling Language docs on generating AI prompts from LinkML schemas. linkml.io/linkml/howtos/…, making use of the new feature in the OpenAI API to structure results as JSON platform.openai.com/docs/guides/gp… 🧵

A huge congratulations to Nicolas Matentzoglu for winning the International Society for Biocuration’s Excellence in #Biocuration Advanced Career Award! We are so proud of you! Int Soc Biocuration link.medium.com/TWQNd3wnLAb

Monarch Initiative HPO The long-awaited manuscript on MAxO is out today! medrxiv.org/content/10.110…

Our Board Member Mónica Muñoz Torres, PhD @monimunozto.bsky.social presenting in #BOSC2023 on standards to connect biomedical and behavioral data to AI in the Bridge2AI program #ISMBECCB2023

A Simple Standard for Sharing Ontological Mappings (SSSOM) Workshop for OHDSI Europe #OHDSISocialShowcase #JoinTheJourney Lead: Nicolas Matentzoglu Co-Author: Melissa Haendel Full Poster: loom.ly/YjudDmk

linkedin.com/posts/chrismun… read about our Monarch Initiative Chat GPT plug-in over on the non X site!

Shawn O’Neil, PhD, MS, assistant research professor in CU Department of Biomedical Informatics (DBMI) and member of the Monarch Initiative, was recently featured in GenomeWeb to discuss how #artificialintelligence fits into the world of genomics. genomeweb.com/informatics/bu…

New video! 🚨 Hear firsthand how @[email protected] at UABPrecisionMedicine used the Monarch Initiative resource and ultimately shortened his son's diagnostic and therapeutic odyssey. (ORIP support through R24OD011883) #ORIPResources orip.nih.gov/resource-direc…