We are excited about CADDIE, a new #Bioinformatics tool developed by one of our graduate students, Michael Hartung in collaboration with @itisalist, Olga Zolotareva, @hhhw_schmidt to enable the systematic discovery of drug repurposing candidates in oncology. academic.oup.com/nar/advance-ar…

Lena Hackl is presenting her poster on how alternative splicing impacts microRNA regulation at the e:Med Meeting on Systems Medicine 2022. If you are here check out her awesome poster (#29). e:Med Systems Medicine #Bioinformatics #AlternativeSplicing

Michael Hartung presented the cancer driver drug interaction explorer CADDIE (exbio.wzw.tum.de/caddie/) at the e:Med Meeting on Systems Medicine 2022. Great job, Michi! e:Med Systems Medicine #Bioinformatics #DrugRepurposing #SystemsMedicine academic.oup.com/nar/article/50…

Building a knowledge graph for biomedical tasks usually takes months or years. 😰 What if you could do it in weeks or days? 🏃 We created BioCypher (biocypher.org) to make it easier than ever, but still flexible and transparent. 🧵⬇️

#DrugstOne: Turn your #Bioinformatics tool into a powerful, interactive #DrugRrepurposing 💊 webtool in <15mins with 3 lines of code. Check out drugst.one/call/ and join our initiative and publication (arxiv.org/abs/2305.15453). Jan Baumbach Michael Hartung Andreas Maier

Additionally, #DrugstOne can be integrated into any other application programmatically through its accompanying Python package. 6/7

Allow users of your website to understand genes 🧬 in complex scenarios. Integrate #DrugstOne with just 3 lines of code in <15 minutes! Upgrade your website to the next level now and join the #DrugstOne Initiative and publication (drugst.one/call/)! Jan Baumbach

Make your website #DrugRepurposing💊 ready in <15mins. Use #DrugstOne and stop manually integrating interactome, drug, or disease info yourself. Even heavy computation is outsourced to the cloud! Join our initiative and paper today! drugst.one/call Jan Baumbach

Get to know the #DrugstOne ecosystem. It lays the foundation for our web-plugin, standalone website and the python package. Upgrade your #biomedical tools and close the gap to #DrugRepurposing! Join our initiative and the paper today! drugst.one/call Jan Baumbach

📄 Knowledge graphs (KGs) are a key technology in biomedicine, but can be hard to create/share/reuse. To make KGs as accessible as possible we developed the #opensource framework BioCypher: nature.com/articles/s4158…, now peer-reviewed Nature Biotechnology. 🧵👇 1/

Excited to announce that our online platform CADDIE (exbio.wzw.tum.de/caddie/) for drug target identification and #DrugRepurposing in #Oncology was awarded the 2023 #ResearchAward by the Hamburg Cancer Society! doi.org/10.1093/nar/gk… #SystemsMedicine @janbaumach Michael Hartung

🎉 Huge congratulations to Michael Hartung, who won the the research award of the Hamburg Cancer Society 2023 with his work "Cancer driver drug interaction explorer". Your hard work truly paid off! We are all very pround! #CancerResearch #Bioinformatics Jan Baumbach