Daniel McDonald
@mcdonadt
Scientific Director of the American Gut Project and The Microsetta Initiative; Knight Lab; UC San Diego Dept. of Pediatrics. he/him. Tweets are my own.
ID: 2301852505
https://scholar.google.com/citations?user=RdRMK0kAAAAJ&hl=en 20-01-2014 18:36:27
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The Tyson lab presents CheckM2, which leverages machine learning for improved estimation of completeness and contamination of metagenome-assembled genomes (MAGs) generated using metagenomics data. Centre for Microbiome Research Alex Chklovski nature.com/articles/s4159…
Some news: After 8 years & 750 stories, I've decided to leave The Atlantic. Today's my last day. Being a writer means you can’t say things like "I can’t tell you what this means" cos, well, I can. That's kind of the point of me. So here’s an attempt at looking back & forward: 1/
BinaRena: our new tool for human-guided exploration and binning of metagenomes. Paper out in the wild! Michael Pavia Microbiome
Really excited to finally see this out! Lots to unpack here. Briefly, our differentiable search & alignment algorithm is competitive with structural prediction methods, and enables scalable remote homology search against large protein databases. Tymor Hamamsy Richard Bonneau
The contributions that Kristian and his team @ScrippsResearch Scripps Research Translational Institute and collaborators have made throughout the pandemic have been immense. His decision to remove himself from this increasingly toxic platform is fully understandable, but unfortunate, to say the least.
An incredible interdisciplinary effort - A network of ~20 specialist microbes assemble to decompose animal flesh, primarily from scavenger insects, regardless of location, climate, or season. Underlies a powerful forensic tool shorturl.at/vQRX4@Zach_Bur… NIJ Director Nancy La Vigne
Our preprint exploring the role of Ne and gene expression on purifying selection in penguins has been recommended by PCI Evolutionary Biology! Approaches can be extended to many non-model organisms, including using expression bins as a proxy for selection coefficients evolbiol.peercommunityin.org/articles/rec?i…
Attending DDW & interested in Microbiome basic & translational research? Check out these Microbiome & Microbial Therapy programmed plenary sessions (see thread below): American Gastroenterological Association (AGA) Digestive Disease Week