There are different versions of the human genome annotation but which do you use? The Matched Annotation from NCBI and EMBL-EBI (MANE) collaboration is the answer and brings new meaning to the phrase: two heads are better than one. ebi.ac.uk/about/news/res…

‼️ ONLINE NOW Nature Genetics 📰 Spatially restricted drivers and transitional cell populations cooperate with the microenvironment in untreated and chemo-resistant pancreatic cancer 🧑🏾‍🤝‍🧑🏻 Li Ding Reyka Jayasinghe, PhD David DeNardo WUSM and colleagues ⬇️ go.nature.com/3AEvt3n

After more than two years of working on this project, we are delighted to share our effort in harmonizing the tumor microenvironment (TME) of glioblastoma (GB) at single-cell resolution and providing insights into the tumor architecture (biorxiv.org/cgi/content/sh…). Details 🧵👇🏼 1/N

I designed this cover for my PhD thesis using #DALL-E and #StableDiffusion, I'm quite happy with the result! Took a few steps to combine the strengths of both engines, I found SD: beautiful images, DALLE: gets the story right; look at the steps below: (1/5+2)

Finally sharing this collaborative work with my amazing labmates Avi and Siqi! We asked how chromosome position and cellular environments impact gene expression noise by developing a new single-cell method (with a genomicsy name just because) 😉 biorxiv.org/content/10.110…

Our paper on insulators is out on Biorxiv! We tested the activity of insulators across thousands of genomic locations to figure out where insulators function. Oh, and I successfully defended today :) biorxiv.org/content/10.110…

We are delighted to share our work, now available in nature: nature.com/articles/s4158… Our scoring system can be accessed here: kinase-library.phosphosite.org Coming soon --> the tyrosine kinome and an improved system with many new functionalities & features! #TheKinaseLibrary #KL

Our single-cell MPRA paper is finally out! Super excited about the potential of this technology to study cell-type specific gene regulation 🥰

english.cw.com.tw/article/articl… Thanks to Commonwealth Magazine CommonWealth Magazine for publishing a summary version of my article detailing my experience of becoming a Taiwanese citizen as a Taiwan Gold Card holder. Please share it forward to those who may benefit from it. Thank you

webR v0.1.0 has just been released! I'm super excited to see what people create by using webR in their own projects 😃. The docs are at docs.r-wasm.org and I've written an introductory blog post talking more about the kind of things webR can do at tidyverse.org/blog/2023/03/w….

We are excited to announce a collection of new human reference genome sequences that reflect much more global diversity! nature.com/articles/s4158…

Today Cell, Cancer Cell and Cell Reports Medicine are pleased to publish the 1st wave of Pan-#Cancer multiomics papers looking at over 1000 patients across 10 #tumor types from National Cancer Institute Clinical Proteomic Tumor Analysis Consortium #CPTAC (1/n) Cancer Cell Cell Reports Medicine #openaccess