Kaitlin Samocha (@ksamocha) 's Twitter Profile
Kaitlin Samocha

@ksamocha

Assistant Investigator @CGM_MGH. Focus on human genomics and modeling rare variation. She/her. You can find me on the other place with the same name.

ID: 2710580269

linkhttp://samochalab.org calendar_today05-08-2014 23:23:05

5,5K Tweet

3,3K Followers

628 Following

Kartik Chundru (@kartikchundru) 's Twitter Profile Photo

I'm very excited to have our work on recessive developmental disorders published at Nature Genetics! See here for the tweetorial (x.com/kartikchundru/…). There were some exciting updates during the reviews which I'll highlight here... (1/n) sanger.ac.uk/news_item/most…

Kartik Chundru (@kartikchundru) 's Twitter Profile Photo

Next, we looked at multi- gene diagnoses. We did not find any residual burden for recessive variants in those already diagnosed. However, to our surprise, there was a substantial residual burden of de novo variants for those diagnosed with either de novo or non-de novo variants!

Next, we looked at multi- gene diagnoses. We did not find any residual burden for recessive variants in those already diagnosed. However, to our surprise, there was a substantial residual burden of de novo variants for those diagnosed with either de novo or non-de novo variants!
Kartik Chundru (@kartikchundru) 's Twitter Profile Photo

Interestingly, and perhaps most importantly, this residual burden was almost completely in non-monoallelic DDG2P genes. This implies that this residual burden is in de novo variants in genes we would not normally consider for monoallelic developmental disorders.

Nicole Lake (@nicolelake) 's Twitter Profile Photo

Excited to share our nature paper introducing constraint metrics for #mtDNA! Constraint models are powerful tools that were missing for mtDNA—until now. By applying our model to #gnomAD, we reveal which sites in mtDNA are most crucial for health & disease nature.com/articles/s4158…

Vijay Ganesh (@vganeshmdphd) 's Twitter Profile Photo

Excited to report our study in NEJM on the discovery of deletions in a long noncoding RNA gene 🧬 (𝘊𝘏𝘈𝘚𝘌𝘙𝘙) as the cause of a newly defined human neurodevelopmental disorder 🧠. 🧵1/10 nejm.org/doi/full/10.10…

Matthew Neville (@mdc_neville) 's Twitter Profile Photo

Excited to share our new preprint in which we address: (1) Accurate sequencing of sperm at scale (2) Positive selection of spermatogenesis driver mutations across the exome (3) Offspring disease risks from male reproductive aging [1/15] medrxiv.org/content/10.110…

Matthew Neville (@mdc_neville) 's Twitter Profile Photo

We detected >35k coding mutations in sperm, equivalent to yields from sequencing >20k trios (!). Using dN/dS tests, we replicate 9 of 13 previously known genes and identify 31 novel genes under positive selection in sperm [9/15]

We detected >35k coding mutations in sperm, equivalent to yields from sequencing >20k trios (!). Using dN/dS tests, we replicate 9 of 13 previously known genes and identify 31 novel genes under positive selection in sperm [9/15]
Matthew Neville (@mdc_neville) 's Twitter Profile Photo

The novel genes are mostly known cancer and developmental disorder genes, but unlike previously known genes, most are enriched for loss-of-function (LOF) mutations rather than missense hotspots and they are linked to diverse pathways [10/15]

The novel genes are mostly known cancer and developmental disorder genes, but unlike previously known genes, most are enriched for loss-of-function (LOF) mutations rather than missense hotspots and they are linked to diverse pathways [10/15]
Matthew Neville (@mdc_neville) 's Twitter Profile Photo

What about the genes which aren’t currently associated with disease? We find that 4 of them have excess loss-of-function variants in healthy populations, suggesting that they are over transmitted to offspring but are at least partially tolerated [13/15]

What about the genes which aren’t currently associated with disease? We find that 4 of them have excess loss-of-function variants in healthy populations, suggesting that they are over transmitted to offspring but are at least partially tolerated [13/15]
Emilie Wigdor (@emiliewigdor) 's Twitter Profile Photo

📣Big news! Our tag-team effort on common variants in rare neurodevelopmental conditions is now out in nature! 📣 Co-first authoring with the brilliant Qinqin Huang🌟—proof that teamwork does make the dream work. 💪 nature.com/articles/s4158…