Very excited to share our single cell RNA universe of monocytes & macrophages across human tissues! @realFlorentGinhoux C.A. Dutertre Kevin Mulder amit Wan Ting & co In Immunity #immunology #Macrophage #monocyte #singlecell #cancerimmunology cell.com/immunity/fullt…

Online now: Cross-tissue single-cell landscape of human monocytes and macrophages in health and disease dlvr.it/S4kgRm

🥇Gold medals all round to Kevin Mulder amit Wan Ting C.A. Dutertre @realFlorentGinhoux et al., for helping to make sense of the MNP scRNASeq literature bit.ly/2V1qXKp

Very very nice work from C.A. Dutertre @realFlorentGinhoux Kevin Mulder amit Wan Ting and co!!!👏👏👏 Pushing the boundaries of scRNAseq analysis by integrating 41 datasets 😱 to resolve and unify monocyte & macrophage populations across human tissues. Very exciting 🥳

📣Best Ph.D. article of the month: Congrats Kevin Mulder C.A. Dutertre @realFlorentGinhoux amit Wan Ting Gustave Roussy: "Cross-tissue single-cell landscape of human monocytes and macrophages in health and disease" Immunity Check out 👇 cell.com/immunity/fullt…

Very proud of this study, highlighting the complexity of myeloid cell lineages and states during brain development and neurodegeneration, showcasing also the importance of fate mapping to validate single cell data! Bravo to Aymeric Silvin! cell.com/immunity/fullt…

2 years post-doc position available in our laboratory to explore dendritic cells in human carcinomas. More details in the link below. Spread the word! twitdoc.com/BNTE

Project at a glance 💪💪

Struggling with spatial-omics data analysis during the holidays break? We have SOPA for you! biorxiv.org/content/10.110…

Along with Quentin Blampey, Paul-Henry Cournède and @realFlorentGinhoux We are excited to share SOPA! A technology-invariant pipeline for analyses of image-based spatial-omics. Compatible with 10x Genomics, Vizgen, Miltenyi Biotec, Akoya Biosciences and more! biorxiv.org/content/10.110…

Struggling with spatial omics analysis? Try Sopa, our new technology-invariant Python library for all image-based spatial-omics! Based on scverse data structures, and built with Kevin Mulder and @realFlorentGinhoux 🚀 github.com/gustaveroussy/…

Proud of you Kevin Mulder !! Who is Kevin Mulder, COST Action #MyeInfoBank's first poster award winner at the Budva meeting? Find out more about him, his academic journey, and his role in a Sopa opera: mye-infobank.eu/watch-this-spa…

Sopa is now published, read the paper and try it out on your own spatial data!👇 nature.com/articles/s4146…

Need help in the analysis of spatial data? Try Sopa, a technology-invariant pipeline! Quentin BLAMPEY, Paul-Henry Cournède and @realFlorentGinhoux nature.com/articles/s4146…

Just before the summer break! Very proud and excited to share our latest work on tumor macrophage ontogeny ! Spatial temporal regulation of TAM development revealed using time stamping approaches! Ms4a3 Creert2 is a gem! science.org/doi/10.1126/sc…, congratulations to the team!

For macrophage lovers! In all different shapes and forms! pubmed.ncbi.nlm.nih.gov/39270324/ Protecting you in head and neck squamous cell carcinoma! aacrjournals.org/cancerdiscover…

Happy to share Novae, our new foundation model for spatial transcriptomics data 💫 Load a pre-trained model and start using Novae in two lines of code! biorxiv.org/content/10.110… github.com/MICS-Lab/novae