Check out my new review on #Tcells annotation methods for single cell data. Chan Zuckerberg Initiative funded project. frontiersin.org/articles/10.33…

Our largest study into the risk factors for #Shingles is now out! Many thanks to all of the volunteers who participated in our #varicella #zoster studies over the years! Also thanks to Marlies Boeren and Romi Vandoren undertaking this huge effort! doi.org/10.1093/infdis…

Save the date! ️ The #ATCR meeting returns May 27-28, 2025 to celebrate the 10th anniversary of AUDACIS! uantwerpen.be/en/conferences…

Excited to share our latest achievement: Consolidated 12 #singlecell datasets into a comprehensive #Tcell atlas. Explore it here: zenodo.org/doi/10.5281/ze… CZI Science airr_community biomina

Check out our updated pre-print on TCR-first analyses in multimodal single-cell RNA seq data. This comes with a new version of STEGO.R, including streamlined QC processes and improved the analysis process with an automated section. CZI Science biorxiv.org/content/10.110…

Charlotte Adams and colleagues generate a ground truth timsTOF dataset to fine-tune the deep learning model Prosit, improving peptide-spectrum match rescoring by up to 3-fold during immunopeptide identification nature.com/articles/s4146…

Recently published! I want to specifically thank OpenMS Team for funding my research stay and Mathias Wilhelm and Wassim Gabriel for an incredible experience in Munich!

Update to the T cell atlas (doi.org/10.5281/zenodo…) that missed a few individuals and was done with the command line process in STEGO.R (github.com/KerryAM-R/STEG…)

UPDATED: Single cell T cell Atlas now has ~1.3M cells from 364 unique samples and 149 individuals with both TCR and GEX zenodo.org/records/126063…. #scTcell_atlas Chan Zuckerberg Initiative

Updated our pre-print for T cell interrogations in single cell datasets. biorxiv.org/content/10.110… Chan Zuckerberg Initiative

Excited to see how ImmuneWatch's DETECT tool helped Dr. Utpal Davé uncover a potential role of CMV in T-cell leukemia. By predicting key antigens, IMW-DETECT provided insights that were confirmed in the lab, paving the way for targeted therapies. youtube.com/clip/UgkxvK77y…

Massive effort by Kerry Mullan to recontextualize data is now out in Science Advances! We developed a new system STEGO to do a TCR-first analysis, and reanalyzed 12 studies and more than 500 000 individual T-cells. Supported by CZI Science ELIXIR Belgium doi.org/10.1126/sciadv…

Check out my latest publication in Science Advances

A new paper, led by Kerry Mullan from Pieter Meysman’s (Pieter Meysman) group, advocates for a TCR-centric approach to analyzing scRNA data from T cells. One highlight is the identification of melanoma- and colitis-specific TCR clusters. | Science Advances doi.org/10.1126/sciadv…

Unlocking the secrets of our immune system is like discovering hidden treasures in a library, where each book holds the key to better health. Pieter Meysman Kerry Mullan CZI Science ELIXIR Belgium Science Advances doi.org/10.1126/sciadv…