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How ribosomes shape protein folding go.nature.com/3TY35ST

Check out the research briefing about our recent paper in nature. We describe how the ribosome shapes folding of its nascent proteins by integrating NMR experiments with all-atom molecular simulations: nature.com/articles/d4158… #NMRchat #compchem #compbio #proteinfolding #ribosome

Do you like CALVADOS, but also proteins with folded domains? If yes, check out Fan’s paper on the CALVADOS 3 model Several changes since the first preprint including a new parameter set and the application to changes in folding stability in condensates dx.doi.org/10.1002/pro.51…

Meet the CALVADOS RNA model on bioRxiv or on 🦋

Super excited to preprint our work on developing a Biomolecular Emulator (BioEmu): Scalable emulation of protein equilibrium ensembles with generative deep learning from Microsoft Research AI for Science. #ML #AI #NeuralNetworks #Biology #AI4Science biorxiv.org/content/10.110…

Happy to share our new preprint describing how #compchem can aid in 19F #NMR experimental design to study large complexes and proteins in cells - with co-first author Sammy Chan , Saifu Daya and John Christodoulou biorxiv.org/content/10.110… #NMRchat

Out now! How to rationally design 19F labels to study structures of large biomol complexes, incl in cells. Using engineered ring currents, and designed with MD and AF. With co-first author Julian Streit, Saifu Daya & John Christodoulou #nmrchat #compchem biorxiv.org/content/10.110…

Tailored NMR experiments combined with a new DNN provide high-resolution spectra of aromatic side chains and accurate uncertainty estimates - enabling quantifications of dynamics and kinetics doi.org/10.1126/sciadv… Science Advances Gogs vaibhav shukla The Francis Crick Institute #NMRchat

Check out our study - NMR & MD simulations reveal how non-native contacts stabilise a key transient intermediate in the lysozyme amyloid cascade. Minkoo Ahn Julian Streit Chris Waudby 🦋 Tomek Wlodarski Angelo M Figueiredo John Christodoulou Dept. of Pharmacology, Univ. Cambridge For CMD ❤️ biorxiv.org/content/10.110…

New preprint on the thermodynamics of co-translational protein folding!

Visualising nascent polypeptide chains emerging from their parent ribosome with cryo-EM and all-atom MD simulations.

Structures of protein folding intermediates on the ribosome biorxiv.org/content/10.110… #biorxiv_biophys

Rationally designing 19F probe pairs was key to determining the structures of protein folding intermediates on the ribosome in our latest preprint. Our design strategy is now published in Nature Communications ! nature.com/articles/s4146… #NMRchat #compchem #compbio

Very happy that this story found its home at PNASNews pnas.org/doi/10.1073/pn…

In press!! NMR & MD simulations reveal how non-native contacts stabilise a key transient intermediate in the lysozyme amyloid cascade. Minkoo Ahn Julian Streit Chris Waudby 🦋 Tomek Wlodarski Angelo M Figueiredo John Christodoulou Dept. of Pharmacology, Univ. Cambridge For CMD ❤️ advanced.onlinelibrary.wiley.com/doi/10.1002/ad…

New preprint with Benjamin Lang, Kriwacki Lab, John Christodoulou, and M. Madan Babu ! biorxiv.org/content/10.110… Protein Dynamics at Different Timescales Unlock Access to Hidden Post-Translational Modification Sites #bioinformatics #compchem #folding #proteindynamics