
Javier Santoyo
@jsantoyo
Molecular & Computational Biologist at @EdinburghUni #Genomics #Bioinformatics #Sequencing. Head of @edgenome. Views my own. Also @ jsantoyo.bsky.social
ID: 302156719
http://www.linkedin.com/in/javiersantoyolopez 20-05-2011 18:04:12
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GENOMICON-Seq enables realistic simulation of amplicon and exome sequencing for low-frequency mutation detection. #DataSimulation #SequenceData #LowFrequencyMutations #Bioinformatics #Genomics Scientific Reports nature.com/articles/s4159ā¦


A fuzzy sequencer for rapid DNA fragment counting and genotyping. #DNAsequencing #FuzzySequencer #Genomics Nature Biomedical Engineering nature.com/articles/s4155ā¦


DiffMethylTools: a toolbox of the detection, annotation and visualization of differential DNA methylation.#DNAmethylation #DifferentialMethylationAnalysis #Bioinformatics #Genomics bioRxiv Bioinfo biorxiv.org/content/10.110ā¦


NANOME: A Nextflow pipeline for haplotype-aware allele-specific consensus DNA methylation detection by nanopore long-read sequencing. #DNAmethylationn #Nanopore #LongRead #Sequencing #Genomics #Bioinformatics bioRxiv Bioinfo biorxiv.org/content/10.110ā¦


Unbiased whole genome comparison of Pan paniscus (bonobo) and Homo sapiens (human) through a novel sequence match-based approach. #WGS #GenomeComparison #Genomics #Bioinformatics bioRxiv Bioinfo biorxiv.org/content/10.110ā¦


š” #KnowledgeHighlight | Biodiversity Genomic Data Management Hub - Training modules by GenomicsAotearoa š genomicsaotearoa.github.io/data-managemen⦠Explore more open-access training materials in the ERGA #KnowledgeHub ā”ļø knowledge.erga-biodiversity.eu #DataManagement #genomic #data #biodiversity

An optimised computational approach for the identification of somatic structural variants in cancer. #SomaticStructuralVariants #CancerGenetics #Genomics #Bioinformatics #ToolsBenchmarking bioRxiv Bioinfo biorxiv.org/content/10.110ā¦


A comparison of long-read single-cell transcriptomic approaches. #LongRead #SingleCell #Transcriptomics #ToolsBenchmarking #Genomics #Bioinformatics bioRxiv Bioinfo Anita Scoones biorxiv.org/content/10.110ā¦


Microbiome-based therapeutics towards healthier aging and longevity. #Mibrobiome #Aging #MicrobiomeTherapeutics Genome Medicine genomemedicine.biomedcentral.com/articles/10.11ā¦









PeGAS: A Versatile Bioinformatics Pipeline for AMR, Virulence and Pangenome Analysis. #AMR #PangenomeAnalysis #Genomics #Bioinformatics Bioinformatics Advances academic.oup.com/bioinformatics⦠Github: github.com/liviurotiul/Peā¦


PangenePro: an automated pipeline for rapid identification and classification of gene family members. #Pangenomes #GeneClassification #Genomics #Bioinformatics Bioinformatics Advances academic.oup.com/bioinformaticsā¦


Genome Evaluation Pipeline (GEP): A fully-automated quality control tool for parallel evaluation of genome assemblies. #GenomeAssembly #QualityControl #Snakemake #Genomics #Bioinformatics Bioinformatics Advances academic.oup.com/bioinformaticsā¦


BugBuster: A novel automatic and reproducible workflow for metagenomic data analysis. #Metagenomics #DataAnalysis #AutomaticPipeline #Genomics #Bioinformatics Bioinformatics Advances academic.oup.com/bioinformaticsā¦
