Javier Santoyo (@jsantoyo) 's Twitter Profile
Javier Santoyo

@jsantoyo

Molecular & Computational Biologist at @EdinburghUni #Genomics #Bioinformatics #Sequencing. Head of @edgenome. Views my own. Also @ jsantoyo.bsky.social

ID: 302156719

linkhttp://www.linkedin.com/in/javiersantoyolopez calendar_today20-05-2011 18:04:12

14,14K Tweet

5,5K Followers

915 Following

Javier Santoyo (@jsantoyo) 's Twitter Profile Photo

GENOMICON-Seq enables realistic simulation of amplicon and exome sequencing for low-frequency mutation detection. #DataSimulation #SequenceData #LowFrequencyMutations #Bioinformatics #Genomics Scientific Reports nature.com/articles/s4159…

GENOMICON-Seq enables realistic simulation of amplicon and exome sequencing for low-frequency mutation detection. #DataSimulation #SequenceData #LowFrequencyMutations #Bioinformatics #Genomics <a href="/SciReports/">Scientific Reports</a> 
nature.com/articles/s4159…
Javier Santoyo (@jsantoyo) 's Twitter Profile Photo

DiffMethylTools: a toolbox of the detection, annotation and visualization of differential DNA methylation.#DNAmethylation #DifferentialMethylationAnalysis #Bioinformatics #Genomics bioRxiv Bioinfo biorxiv.org/content/10.110…

DiffMethylTools: a toolbox of the detection, annotation and visualization of differential DNA methylation.#DNAmethylation #DifferentialMethylationAnalysis #Bioinformatics #Genomics <a href="/biorxiv_bioinfo/">bioRxiv Bioinfo</a> 
biorxiv.org/content/10.110…
Javier Santoyo (@jsantoyo) 's Twitter Profile Photo

NANOME: A Nextflow pipeline for haplotype-aware allele-specific consensus DNA methylation detection by nanopore long-read sequencing. #DNAmethylationn #Nanopore #LongRead #Sequencing #Genomics #Bioinformatics bioRxiv Bioinfo biorxiv.org/content/10.110…

NANOME: A Nextflow pipeline for haplotype-aware allele-specific consensus DNA methylation detection by nanopore long-read sequencing. #DNAmethylationn #Nanopore #LongRead #Sequencing #Genomics #Bioinformatics <a href="/biorxiv_bioinfo/">bioRxiv Bioinfo</a> 
biorxiv.org/content/10.110…
Javier Santoyo (@jsantoyo) 's Twitter Profile Photo

Unbiased whole genome comparison of Pan paniscus (bonobo) and Homo sapiens (human) through a novel sequence match-based approach. #WGS #GenomeComparison #Genomics #Bioinformatics bioRxiv Bioinfo biorxiv.org/content/10.110…

Unbiased whole genome comparison of Pan paniscus (bonobo) and Homo sapiens (human) through a novel sequence match-based approach. #WGS #GenomeComparison #Genomics #Bioinformatics <a href="/biorxiv_bioinfo/">bioRxiv Bioinfo</a> 
biorxiv.org/content/10.110…
European Reference Genome Atlas (@erga_biodiv) 's Twitter Profile Photo

šŸ’” #KnowledgeHighlight | Biodiversity Genomic Data Management Hub - Training modules by GenomicsAotearoa šŸ”— genomicsaotearoa.github.io/data-managemen… Explore more open-access training materials in the ERGA #KnowledgeHub āž”ļø knowledge.erga-biodiversity.eu #DataManagement #genomic #data #biodiversity

Javier Santoyo (@jsantoyo) 's Twitter Profile Photo

An optimised computational approach for the identification of somatic structural variants in cancer. #SomaticStructuralVariants #CancerGenetics #Genomics #Bioinformatics #ToolsBenchmarking bioRxiv Bioinfo biorxiv.org/content/10.110…

An optimised computational approach for the identification of somatic structural variants in cancer. #SomaticStructuralVariants #CancerGenetics #Genomics #Bioinformatics #ToolsBenchmarking <a href="/biorxiv_bioinfo/">bioRxiv Bioinfo</a> 
biorxiv.org/content/10.110…
Javier Santoyo (@jsantoyo) 's Twitter Profile Photo

A comparison of long-read single-cell transcriptomic approaches. #LongRead #SingleCell #Transcriptomics #ToolsBenchmarking #Genomics #Bioinformatics bioRxiv Bioinfo Anita Scoones biorxiv.org/content/10.110…

A comparison of long-read single-cell transcriptomic approaches. #LongRead #SingleCell #Transcriptomics #ToolsBenchmarking #Genomics #Bioinformatics <a href="/biorxiv_bioinfo/">bioRxiv Bioinfo</a> <a href="/AnitaScoonesPhd/">Anita Scoones</a> 
biorxiv.org/content/10.110…
Javier Santoyo (@jsantoyo) 's Twitter Profile Photo

Microbiome-based therapeutics towards healthier aging and longevity. #Mibrobiome #Aging #MicrobiomeTherapeutics Genome Medicine genomemedicine.biomedcentral.com/articles/10.11…

Microbiome-based therapeutics towards healthier aging and longevity. #Mibrobiome #Aging #MicrobiomeTherapeutics <a href="/GenomeMedicine/">Genome Medicine</a>
genomemedicine.biomedcentral.com/articles/10.11…
UCSC Genome Browser (@genomebrowser) 's Twitter Profile Photo

We turn 25 today! July 7th marks the 25th anniversary of the human genome going online and the start of the UCSC Genome Browser. Then vs. now, we have 165k monthly visitors, and our codebase is over three million lines of code. See our news for more: bit.ly/genomeBrowser2…

We turn 25 today!

July 7th marks the 25th anniversary of the human genome going online and the start of the UCSC Genome Browser.

Then vs. now, we have 165k monthly visitors, and our codebase is over three million lines of code.

See our news for more: bit.ly/genomeBrowser2…
EichlerLab (@eichlerlab) 's Twitter Profile Photo

Using >130 human & 12 primate haplotypes, we reconstruct the chromosome 22q11.2 evolution to identify haplotype structures linked to deletions or inversions, explaining the lower prevalence of 22q11.2 deletion syndrome in individuals of African descent. biorxiv.org/content/10.110…

Using &gt;130 human &amp; 12 primate haplotypes, we reconstruct the chromosome 22q11.2 evolution to identify haplotype structures linked to deletions or inversions, explaining the lower prevalence of 22q11.2 deletion syndrome in individuals of African descent.
biorxiv.org/content/10.110…
ELIXIR Europe (@elixireurope) 's Twitter Profile Photo

šŸ“† Register your interest to join #BioHackEU25 in person before 15 July! All expressions of interest will be reviewed, and accepted attendees will be notified by the end of July. More information: loom.ly/UfwZREk

šŸ“† Register your interest to join #BioHackEU25 in person before 15 July!
All expressions of interest will be reviewed, and accepted attendees will be notified by the end of July.

More information: loom.ly/UfwZREk
Javier Santoyo (@jsantoyo) 's Twitter Profile Photo

Agptools: a utility suite for editing genome assemblies. #GenomeAssembly #AssemblyEditing #AGPfiles #Genomics #Bioinformatics academic.oup.com/bioinformatics…

Agptools: a utility suite for editing genome assemblies. #GenomeAssembly #AssemblyEditing #AGPfiles #Genomics #Bioinformatics 
academic.oup.com/bioinformatics…
Javier Santoyo (@jsantoyo) 's Twitter Profile Photo

CCRR: A User-Friendly Platform for Analyzing Complex Chromosomal Rearrangements in Tumors. #SVs #CNV #ChromosomalRearrangements #Genomics #Bioinformatics academic.oup.com/bioinformatics…

CCRR: A User-Friendly Platform for Analyzing Complex Chromosomal Rearrangements in Tumors. #SVs #CNV #ChromosomalRearrangements #Genomics #Bioinformatics
academic.oup.com/bioinformatics…
Javier Santoyo (@jsantoyo) 's Twitter Profile Photo

Benchmarking Peak Calling Methods for CUT&RUN. #CUTandRUN #Benchmarking #Genomics #Bioinformatics academic.oup.com/bioinformatics…

Benchmarking Peak Calling Methods for CUT&amp;RUN. #CUTandRUN #Benchmarking #Genomics #Bioinformatics 
academic.oup.com/bioinformatics…
Javier Santoyo (@jsantoyo) 's Twitter Profile Photo

PeGAS: A Versatile Bioinformatics Pipeline for AMR, Virulence and Pangenome Analysis. #AMR #PangenomeAnalysis #Genomics #Bioinformatics Bioinformatics Advances academic.oup.com/bioinformatics… Github: github.com/liviurotiul/Pe…

PeGAS: A Versatile Bioinformatics Pipeline for AMR, Virulence and Pangenome Analysis. #AMR #PangenomeAnalysis #Genomics #Bioinformatics <a href="/BioinfoAdv/">Bioinformatics Advances</a>
academic.oup.com/bioinformatics… 

Github: github.com/liviurotiul/Pe…
Javier Santoyo (@jsantoyo) 's Twitter Profile Photo

PangenePro: an automated pipeline for rapid identification and classification of gene family members. #Pangenomes #GeneClassification #Genomics #Bioinformatics Bioinformatics Advances academic.oup.com/bioinformatics…

PangenePro: an automated pipeline for rapid identification and classification of gene family members. #Pangenomes #GeneClassification #Genomics #Bioinformatics <a href="/BioinfoAdv/">Bioinformatics Advances</a>
academic.oup.com/bioinformatics…
Javier Santoyo (@jsantoyo) 's Twitter Profile Photo

Genome Evaluation Pipeline (GEP): A fully-automated quality control tool for parallel evaluation of genome assemblies. #GenomeAssembly #QualityControl #Snakemake #Genomics #Bioinformatics Bioinformatics Advances academic.oup.com/bioinformatics…

Genome Evaluation Pipeline (GEP): A fully-automated quality control tool for parallel evaluation of genome assemblies. #GenomeAssembly #QualityControl #Snakemake #Genomics #Bioinformatics <a href="/BioinfoAdv/">Bioinformatics Advances</a>
academic.oup.com/bioinformatics…
Javier Santoyo (@jsantoyo) 's Twitter Profile Photo

BugBuster: A novel automatic and reproducible workflow for metagenomic data analysis. #Metagenomics #DataAnalysis #AutomaticPipeline #Genomics #Bioinformatics Bioinformatics Advances academic.oup.com/bioinformatics…

BugBuster: A novel automatic and reproducible workflow for metagenomic data analysis. #Metagenomics #DataAnalysis #AutomaticPipeline #Genomics #Bioinformatics <a href="/BioinfoAdv/">Bioinformatics Advances</a>
academic.oup.com/bioinformatics…