After over over two intense months, our preprint on Sars-CoV-2 antibody testing is out. We measure antibody binding based on Immunofluorescence, using high-throughput microscopy and image analysis to make the approach scalable. biorxiv.org/content/10.110…

What is this sorcery Matplotlib and why didn't I know this before?

New release VizTracer 0.14.0 analyze your Python code and find bottlenecks and problems during the execution of your program github.com/gaogaotiantian…

Interested in computational modeling of the failing human heart? Etiology is key. Aparna Joachim Greiner Stavros George Drakos UofU Nora Eccles Harrison CVRTI UtahBME frontiersin.org/article/10.338…

Releasing #omnipose, a cell segmentation algorithm inspired by and built from #cellpose. Omnipose improves on all cell types but shows exceptional out-of-the-box performance on bacteria with extended morphologies. 1/8

We are very proud to have been given an opportunity to summarise the current state of 3D electron microscopy in our research area: nature.com/articles/s4156… Congratulations Peter Kohl, Joachim Greiner and Eva Rog-Zielinska!

Finally - Our study on the reconstruction of myocardial microstructure and estimation of intracellular conductivities is in press: sciencedirect.com/science/articl… Joachim Greiner Aparna UofU Nora Eccles Harrison CVRTI Project MICROCARD

We’ve uploaded the MitoNet paper onto bioRxiv! biorxiv.org/content/10.110… It’s a generalist ( & a step toward a “universal”) mitochondrial segmentation model. Why is #MitoNet cool and what are these resources volume-em.github.io/empanada we release to the #volumeEM community? 🧵(1/11)

The prettiest poster session location that I’ve seen — open-air poster session of our institute retreat at Feldberg was fantastic! :-)

#IEKM retreat in the Schwarzwald! We spent the weekend exchanging ideas, discussing on how to improve our work environment, communication and research, and last but not least growing as a team! #TeamBuilding #MakeBetterScars #CardiacResearch #TranslationalMedicine

Together with the wonderful collaborators and community partners, we are happy to finally present the BioImage Model Zoo at bioimage.io, now described in biorxiv.org/content/10.110….

#CRC1425 retreat for the 2nd annual meeting at Schluchsee! Here professors, researchers and early career scientists brainstorm and collaborate towards a better understanding of how to #MakeBetterScars! SFB1425_MakeBetterScars #Afib #CardiacResearch #TranslationalMedicine

Today at the plenary discussion for the SFB1425_MakeBetterScars, the winners of the poster session #CRC1425 2022 have been awarded! Congratulations to all of you for the progress made and best of luck for the next steps in your projects! #CardiacResearch #TranslationalMedicine

#TwitterBasedLOI:A globally accessible imaging core facility backed by open-source soft- and hardware that is supported by an “image.sc”-like Forum to exchange ideas, solutions&work on projects collaboratively - worldwide? TLDR: A thread that asks for help! 1/N

The #MEC2022 is about to start. All the attendees are now registering.. -30 minutes! Thank you to DFG public | @[email protected] Medtronic Journal of Physiology for making this possible and Prof. Peter Kohl for bringing us together! #CardiacResearch #TranslationalMedicine #MakeBetterScars

Last day at DGK with new (striped and non-striped) friends

Joachim Greiner from Universität Freiburg is giving a great talk about #cardiac microstructure ! #MICROCARD #euroHPC #euproject #team #innovation #exascale #livetweet

Here with Journal of Physiology Editor in Chief and SFB1425_MakeBetterScars at #Physiology2023

#DGK2024 congratulation to April Fu, Sophia Ohnemus and Joachim Greiner for the selection as candidates for a poster prize!! Stay tuned! We #MakeBetterScars #CRC1425

Excited to share our study on spatio-temporal reconstruction of cardiac scar formation led by Andy Chan. We combine scRNA-seq with spatial transcriptomics to resolve the fibrotic niche and the niche of dedifferentiating cardiomyocytes. biorxiv.org/content/10.110…