Glad to see this paper out in time for Asilomar! My thanks to the reviewers for helpful improvements to the paper - expect more exciting developments for Sage too (like native, portable Bruker file reading 😉)

Incredibly excited and proud to announce our latest work in Nature Communications 🎉 We introduce lesSDRF, an innovative tool revolutionizing metadata annotation in proteomics using the SDRF format. 🔗 Check out our article: nature.com/articles/s4146… (1/3) #proteomics #metadata

Love this rainbow silk filament! This structure is the HLA0201 protein, crucial for our immune system. Thanks to Jonas Scheid for pointing out the hidden moose in this structure, can you find it?

ProteomicsML is a collaborative, community-driven resource that streamlines proteomics data acquisition and curation for machine learning. Find out more and give ProteomicsML a try 👇 ebi.ac.uk/about/news/tec…

This is a massive release, a huge effort by Vlad Savelyev. I've been talking about it for years and it's a great feeling to see it go live at last! 🚀 Check out the accompanying blog post for an overview of why I'm excited: seqera.io/blog/multiqc-p… 🎻✨

Maintaining open-source software tools is a massive task, one of the reason lot of tools move away from it. I'm so happy to be part of #OpenMS community and contribute to one of the longer OS software in the field of #proteomics nature.com/articles/s4159…

Happy to announce MS²Rescore v3.0, our much-improved platform for #MachineLearning-driven rescoring of #Proteomics search results. Read more in our publication or in the thread below. bit.ly/3VjMHOg

Pipeline release! nf-core/mhcquant v2.6.0 - MHCquant 2.6.0 - Mr Bob! Please see the changelog: github.com/nf-core/mhcqua…

Happy to see #quantms out nature.com/articles/s4159…. Thanks to the main authors Dai & Julianus. The OpenMS Team Oliver Kohlbacher - Now @okohlbacher.bsky.social & Vadim Demichev for the support with OpenMS and DIANN. Thanks to Lukas Käll for his incredible work with the data. Thanks to nf-core & Nextflow platforms.

The value of ‘wasting time’ on deep thinking is often overlooked in a scientific ecosystem increasingly tainted by Wall Street’s productivity mindset. nature.com/articles/d4158…

Today we had the honor to welcome Marna Davis the founder of the #fibrolammelar #carcinoma Fibrolamellar Cancer. She brought us a big surprise: The #approval of our grant to fund a #clinicalstudy with our fusion-based peptide vaccine in FLC #patients.

Ever wondered how many closely eluting peptides have the same fragmentation pattern? In collaboration with Mathias Wilhelm we explored the theoretical nonaccessible portion of the human proteome. Check our new publication at ACS Analytical Chemistry Journals #proteomics pubs.acs.org/doi/10.1021/ac…

(2/2) 👉 Papers without code are just advertisements. 👉 #OpenSource is only good for science. 👉 Proprietary software has a place in commercialization. 👉 There are models to commercialize #OpenSource software. Read it here: willfondrie.com/2024/10/the-ca…

We are #hiring! 🚀 Join our #bioinformatics team in a truly #interdisciplinary environment driving #immunopeptidomics analyses and pipeline development with direct impact on advancing patient treatment! Check out the full job description: jobs.medizin.uni-tuebingen.de/Job/5336/Bioin…

🤔You are a 👩‍🔬 👨‍🔬 #Bioinformatician and have a soft spot for working on mass spectrometry-based #immunopeptidomics and the characterization of #tumor-associated #antigens? 🤗Then become part of Peptide-based Immunotherapy and apply now! ➡️jobs.medizin.uni-tuebingen.de/Job/5336/Bioin… #Job #jobopportunities