Microbiome and metabolome data integration reflects stress and serotonin metabolism in IBS tandfonline.com/doi/full/10.10… great collaboration between Metabolism, Digestion & Reproduction and UniversityMaastricht, with Zlatan Mujagic MD PhD and Melpi Kasapi in particular #TeamScience #OpenAccess

📢 Happy to share our new study on 🙍‍♀️🦠 host-microbiome interaction in #IBS ➡️ just published in #GutMicrobes Great collaborative work between Maastricht UMC+ Gastroenterology & Hepatology Imperial College London & UMCG Genetica. Details in 🧵 #GITwitter #microbiota #MedTwitter

first blog post avishvj.github.io/posts/rudin/ on Cynthia Rudin's interpretability classic. this paper shaped a lot of my views on interpretability but I think there's some wiggle room for explainability in scientific discovery tasks a la transformer-based work from Philippe Schwaller (he/him) Žiga Avsec

Interested in doing a master in research in biomedical data science? Sign up for our virtual open day and learn more about the Data Science and Epidemiology, Evolution and Control of Infectious Diseases streams on 12/Jan/23 here imperial.ac.uk/events/156228/…

Interested in a #masters in #biomedical #DataScience or #epidemiology of #infectious disease? Come to Imperial College London! Find out more at imperial.ac.uk/study/courses/… or imperial.ac.uk/study/courses/… and view our recent open event: youtu.be/T-7jo1DQPf8

Presenting our CoDiet work package 1 to use NLP/AI technologies to automatically read the entire biomedical literature on diet and cardiometabolic disease. #kickoffmeeting Stay tuned for updates in the next 4+ years...

And here goes day 2 of our Kick Off Meeting! Getting everyone involved in discussion is JMPosma discussing what search terms to include or exclude for our ambitious NLP/AI-driven literature review approach 🔍

The application deadline closes tomorrow (8 March) for this postdoc in #bioNLP at Imperial College London focussing on developing tools to facilitate literature review for non-communicable disease in the CoDiet project, so if you have not yet pressed 'apply'...

If refusing all non-essential #cookies takes so much time...is the website attempting to make our browser obese?

Excited to share with everyone our new ML method, LAVASET, developed by JMPosma and myself! Special thanks to Kexin Xu, Declan O'Regan, James Ware, and Tim Ebbels for their valuable input and data sharing. biorxiv.org/content/10.110…

Kind of makes you wonder, when your preprint gets posted and within 3 hours you get a badly formatted email asking to submit it to a journal (an Elsevier one) from a Deputy Editor...when that journal's Chief Editor already sent it out for peer review the week before! 🤔