Syntenet: an R/Bioconductor package for the inference and analysis of synteny networks academic.oup.com/bioinformatics…

Single-cell RNA-seq reveals distinct metabolic “microniches” and close host-symbiont interactions in deep-sea chemosynthetic tubeworm science.org/doi/full/10.11…

We developed VEHoP, a new phylogenomic pipeline that takes various data inputs. In collaboration with Kevin Kocot & C. Chen @ Jamsteeeec The link is here: biorxiv.org/content/10.110…

AncFlow: An Ancestral Sequence Reconstruction Approach for Determining Novel Protein Structural biorxiv.org/cgi/content/sh… #biorxiv_bioinfo

FoldMason: Multiple Protein Structure Alignment at Scale biorxiv.org/content/10.110…

Excited to share our work on animal genome structure led by Tom Lewin! We assembled a dataset of 64 animal genomes and quantified shuffling rates to provide a comprehensive view of genome evolution across various lineages. 1/3 doi.org/10.1101/2024.0…

We are exciting to share our most recent study where we discovered ~12h rhythms of mRNA processing and proteostasis gene expression in the white blood cells of healthy humans under ‘free-living’ condition, sharing great homology to circatidal gene program. nature.com/articles/s4432…

"Insights into early animal evolution form the genome of the xenacoelomorph worm Xenoturbella bocki" elifesciences.org/articles/94948

Strategies to overcome the challenges of low or no expression of heterologous proteins in Escherichia coli sciencedirect.com/science/articl…

Seq2Topt: a sequence-based deep learning predictor of enzyme optimal temperature biorxiv.org/cgi/content/sh… #biorxiv_bioinfo

Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes genomebiology.biomedcentral.com/articles/10.11…

Annelid Comparative Genomics and the Evolution of Massive Lineage-specific Genome Rearrangement in Bilaterians academic.oup.com/mbe/advance-ar… Molecular Biology and Evolution

Unsupervised domain classification of AlphaFold2-predicted protein structures biorxiv.org/cgi/content/sh… #biorxiv_bioinfo

🚨 Last chance! Regular registration & abstract submission for #17DSBS closes on August 31st! Join the deep-sea science community in Hong Kong (or online) next January. Don’t miss out—register now! 🌊👇 🔗 17dsbs.hkust.edu.hk/registration

Happy to share my first postdoc paper, out today in Nature! nature.com/articles/s4158… This started with a simple question: Can we learn more about viral proteins by looking at their predicted structures? /1

[New Paper] is a collab with Sony showcasing a new method to evaluate particle dynamics using the Event‐based Vision Sensor! By focusing on brightness shifts, it reaches 10,000 fps even under low-light. OPEN ACCESS Ecology and Evolution : doi.org/10.1002/ece3.7… 海ゴリラ＠深海問答 NorioM (○▽○)

GageTracker: a tool for dating gene age by micro- and macro-synteny with high speed and accuracy biorxiv.org/content/10.110…

OrthoBrowser: Gene Family Analysis and Visualization biorxiv.org/content/10.110…

This nasty pathogen infects the nuclei of mussels, multiplies to >80000 cells, swelling nuclei to >50 times their size. Where does its nutrition come from? How does it avoid apoptosis? Read our paper, just out! nature.com/articles/s4156…

GW: ultra-fast chromosome-scale visualisation of genomics data. #ChromosomeVisualization #GenomicsData bioRxiv Bioinfo #Bioinformatics biorxiv.org/content/10.110…