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Nature research paper: Chromatin loops are an ancestral hallmark of the animal regulatory genome go.nature.com/4d1RR8g

CAnDI: a new tool to investigate conflict in homologous gene trees and explain convergent trait evolution academic.oup.com/sysbio/advance… Society of Systematic Biologists

Interesting work. 12h rhythms of lipid metabolism in the Drosophila fat body, independent of the circadian clock. Circadian clock-independent ultradian rhythms in lipid metabolism in the Drosophila fat body - Journal of Biological Chemistry jbc.org/article/S0021-…

cool

A genomic catalog of Earth's bacterial and archaeal symbionts biorxiv.org/content/10.110…

Gene Loss DB: A curated database for gene loss in vertebrate species. biorxiv.org/content/10.110… #biorxiv_bioinfo

Protein templates are finally supported in Boltz-2! Next up: updating BoltzDesign1 to use Boltz2 for template-based motif scaffolding and more

Glad to see this paper finally out! An episodic burst of massive genomic rearrangements and the origin of non-marine annelids NatureEcoEvo Institute of Evolutionary Biology (IBE) Metazoa Phylogenomics Lab CSIC European Research Council (ERC) nature.com/articles/s4155…

Static AF2 PDB snapshots are so 2024 😂 AlphaFold is no longer just a crystal‑structure oracle🪄, bAIes turns its distograms into atom‑level movies, useful for IDPs It matches Anton‑scale MD in GPU hours, not months at a fraction of the cost🔥

Blastn2dotplots: multiple dot-plot visualizer for genome comparisons bmcbioinformatics.biomedcentral.com/articles/10.11…

SSAlign: Ultrafast and Sensitive Protein Structure Search at Scale １．The rapid growth of protein structure databases, fueled by AlphaFold3 and ESMFold, demands faster, more sensitive search tools. Existing methods like Foldseek struggle with sensitivity and scalability,

GenomeFISH: genome-based fluorescence in situ hybridisation for strain-level visualisation of microbial communities academic.oup.com/ismej/advance-…

BEAST X for Bayesian phylogenetic, phylogeographic and phylodynamic inference nature.com/articles/s4159…

torchtree: flexible phylogenetic model development and inference using PyTorch academic.oup.com/sysbio/advance… Society of Systematic Biologists

When #AlphaFold2 came out, we wondered: Could it help us understand how enzymes evolve? So we tried it—and it worked! nature.com/articles/s4158…