JBrowse v2.4.0 released, with new dark theme and SVG export capability added to the circular, synteny, and dotplot views jbrowse.org/jb2/blog/2023/…

I am happy to announce that the #JBrowse2 paper has be published in Genome Bio. There is lots of cool stuff: synenty, structural variation, plugins, multi chromosome and multi genome views, a graphical configuration editor, a desktop and easy-to-embed apps genomebiology.biomedcentral.com/articles/10.11…

The main JBrowse 2 paper went live today Genome Biology 🧬 It was a true pleasure being a part of this team. I'm really proud of all of the crazy advances that we shipped. New views for synteny, dotplots, breakpoints, gene fusions, whole-genome overviews, and much more.

We just released v2.6.1 which contains a new NPM package @jbrowse/react-app which allows NPM installation of the full jbrowse web app. Also contains lots of bugfixes and improvements, see release notes! jbrowse.org/jb2/blog/2023/…

Releasing our guide to extending 3'UTRs using #peaks2utr github.com/Squalomix/utr-… There could be better solutions, but we believe this is a handy way wroth testing. This activity will be briefly introduced at the upcoming #zsj94 conference. #NBRPメダカ #動物学会 10x Genomics

Just released v2.7.0, featuring new persistent bookmarks, new keyboard shortcuts, React 18, and lots of smaller bugfixes and improvements! See jbrowse.org/jb2/blog/2023/…

v2.7.2 released, with a "universal" macOS build for jbrowse desktop, which should have improved performance for M1/M2 Macs jbrowse.org/jb2/blog/2023/…

New blog post: Office hours and community meetings with the JBrowse 2 team! jbrowse.org/jb2/blog/2023/…

JBrowse v2.8.0 released with a new feature for rendering SVs with arcs for VCF and BEDPE files. See release notes jbrowse.org/jb2/blog/2023/…

First community meeting ETA ~30min! Video call link: meet.google.com/uti-xsjf-xbu

Our first community call was great, thanks to everyone who joined! We had 5 total people including 3 core team members :) Our second community meeting today, 5pm Pacific! Join meet.google.com/rnq-exdt-tuz

JBrowse v2.9.0 released, with new "Recently used tracks" and "Favorite tracks" panels jbrowse.org/jb2/blog/2023/…

JBrowse v2.10.0 released, featuring a new file format called PIF ("pairwise indexed mapping format") that allows for indexed access to PAF files! Release notes here jbrowse.org/jb2/blog/2023/…

In ~30min (10am EST) we will have our last community meeting of the year. Video call link meet.google.com/uti-xsjf-xbu

TreeGenes & #CartograPlant will be presenting in #Forest Tree (Sunday) & Digital Tools (Monday) - integrated analytics for #popgen studies - #genotype, #phenotype, & envionmental data for all plants! The Tripal Project The Tweet Of GMOD fairdata #hpc JBrowse #PAG31 PAG-International Plant & Animal Genome Conference

JBrowse v2.10.2 released, with a new feature to launch the breakpoint split view directly from raw reads jbrowse.org/jb2/blog/2024/…

How does Pombase use resources effectively? With a little help from our friends...Protein Data Bank Gene Ontology @[email protected] Rhea database Monarch Initiative Alliance of Genome Resources JBrowse SGD Project @[email protected] (bsky too) UniProt InterPro microPublication Thread/ academic.oup.com/genetics/artic…

Today's evening workshop on Xenbase was given by Aaron Zorn Christina and Aaron! Great to see the new features of JBrowse 2.0 and integration of NCBI GEO tracks w. Genome assembly 10.1 🤩🐸

We just released JBrowse v2.11.0 with new feature "Color by CDS" to help see which translation frame is used in the gene glyphs, and new Hi-C "color schemes" and log-transformed display jbrowse.org/jb2/blog/2024/…