It's a wrap!I had a blast in my first semester teaching UNIVERSITÄT LEIPZIG / ScaDS.AI Dresden/Leipzig.AI: Microscopy Research Data/Software Management, #BioImageAnalysis, Napari, #LLMs. All materials are online #openaccess: about 800 PPT slides + 100 Jupyter Notebooks 🖥️🔬🔓🎉 github.com/ScaDS/BIDS-lec…

🔥Your data just got more interactive! 🔥 With our new InteractiveSheet feature you can create and edit Google Sheets from a Colab notebook! 🤯 Perfect for analyzing or editing data in a GUI or just simply exporting outputs to Sheets. Streamline data workflows with #GoogleSheets

I'm very excited to announce the #OME_NGFF_workflows_hackathon for November 18th - 22nd at the BioVisionCenter in Zurich, Switzerland. Sign up here: ema.uzh.ch/en/register/om… (1/n)

📢Save the Date for Virtual I2K 2024! 📅 Oct 28-30, 2024 - virtual, all time zones Workshop Submissions are Open NOW until Oct 9! Register in Sept! More Details i2kconference.org/virtual! BINA is co-hosting this event with Center for Open Bioimage Analysis and GloBIAS . #I2K2024virtual #OpenSource

In case you missed this: we are hosting the #OME_NGFF_workflows_hackathon in November! Save the date and come have some bioimage analysis fun with us in Zürich!

Preprint #1: segmenting nuclei in pathology images. Some methods exist - but it remains a hard problem. Partly because the images are complex & variable, partly because they are *huge*. Here’s a 38 GB OpenSlide image. Nuclei are small & there are lots. doi.org/10.48550/arXiv…

Everyday is spline day, and today even more! We are releasing #SplineBox, a Python package for spline fitting 🐍 Fantastic collab with the EPFL Center for Imaging Center building on my EMBL-EBI work. Check it out, feedback welcome (love letters or angry e-mails): splinebox.readthedocs.io

1/ I'd like to share a short thread about our project to build a nationwide, distributed core-facility for bioimage analysis. We discuss this in our recent preprint: arxiv.org/abs/2409.15009

A 25-year-old woman with type 1 #diabetes started producing her own insulin < three months after receiving a transplant of reprogrammed stem cells. She is the first person with the disease to be treated using cells that were extracted from her own body. nature.com/articles/d4158…

Looking at the world through a microscope 🧵 1. Terrifying photo of an ant's face

Microscopy Nodes 2.0 is out! This includes a new channel interface and OME-Zarr support! 🔬🎉 youtube.com/watch?v=ybQcKE…

Hi all! #I2K has started and I would like to make a shameless plug of Institut Pasteur, since 1887 people contributions A thread 👇

New from me and a huge cast of amazing bioimage analysts in J Cell Science - - "The crucial role of bioimage analysts in scientific research and publication" journals.biologists.com/jcs/article/13… . Hop into 🧵to learn more! (1/x)

Have you ever analyzed a #microscope image before- even just a single one? Please take our survey on progress and places to still improve for image analysis software! #microscopy #imageanalysis #bioimageanalysis forum.image.sc/t/2024-image-a…

Please take a moment to complete this important survey!

The next Careers Speaker Series presentation is tomorrow, Nov 7 at 12 pm CT, hosted by the Early Career WG! Join as David Joy, Denali Therapeutics, shares about his career journey bioimagingnorthamerica.org/careers-speake… Register to attend bioimagingnorthamerica.org/events/careers… #Careers #Imaging #BioImaging

🚨🚨 MEGA JOB ALERT 🚨🚨 Independent Group Leader Positions in Computational Biology Human Technopole! Are you ready to start your own lab? Do you know someone who is? Repost this + share with everyone who might want to know about it. Thanks!!! 🙏 More details below... 🧵 1/3

Come and work with us! Super exciting and relevant projects! Become an #AI pro and do something positive for the 🌍! 👩‍🎓 🧑‍🎓

This is a nuclide chart. Number of Protons on Y axis Number of Neutrons on X axis The chart shows every known element and every known isotope. The proton number determines the element, the neutron number determines the isotope. The colour illustrates the half life of each