🎥 Il reste de la place pour le festival Sciences en Cour[t]s ! 🗓️ 13 octobre 🗺️ Diapason ⌚️ 20h 🎫 billetweb.fr/sec2022 👋 @DiapasonRennes @UnivRennes1 Université Rennes 2 Espace des sciences | Rennes Fête de la science @FondationR1 IGDR Rennes Ville et Métropole ESRA Officiel

QuickDeconvolution is out! Very happy to have developed that within the GenScale Team. Deconvolve your linked reads data to finally have one cloud per barcode. academic.oup.com/bioinformatics…

1) Assemblers do not like structural heterogeneity! Often results in a misassembly. 2) Some misassemblies are completely mysterious and have no clear cause. 3) Assembly can be non-deterministic: re-running an assembly with identical parameters can give a different result. (2/2)

Very happy to receive the best student's paper award at the Bioinformatics part of BIOSTEC2024 conference 🥳! Work on using ILP to improve metagenomic assembly. Soon on biorXiv. With Rumen Andonov and Tam Truong in the GenScale Team.

[1/11] Thrilled to announce our latest preprint on function-assigned masked superstrings (shortly, f-masked superstrings or f-MS), which transform masked superstrings into an operationally complete data type for k-mer sets. w/Ondřej Sladký and Pavel Veselý

Soon, we will see more long and ultra-long read technologies that combine sequencing, sequence alignment and AI for error correction. I am proud that our lab has contributed to this by github.com/lbcb-sci/racon github.com/Martinsos/edlib and github.com/lbcb-sci/herro,

In what journal do you publish? I am looking for well-established bioinformatics journals with reasonable APC, but I can't find anything below $3000 😓

Today we’re excited to freely share an early-version of, perhaps, the world’s most expansive genetics dataset: Logan. #bioinformatics #petabase #genetics #genomics #openscience biorxiv.org/content/10.110…

A new nanopore sequencer from BGI biorxiv.org/content/10.110… Unfortunately, they do not provide reads to evaluate them.

FroM Superstring to Indexing: a space-efficient index for unconstrained k-mer sets using the Masked Burrows-Wheeler Transform (MBWT) biorxiv.org/cgi/content/sh… #biorxiv_bioinfo