As a part of the Advanced Data Analysis Unit of GIMM Foundation, I have worked with some transcriptomic datasets. Considering I have faced different data types, scenarios and analysis requirements, I have decided to create a github repository for RNASeq analysis.

If you’re looking for a postdoc and you are interested in applying AI to imaging data, and would like to have a fancy fellowship, reach out :-) postdoc.ucsd.edu/funding/schmid…

Last days to apply!

Today we release the first set of #opensource Cell Painting Data generated in the EU-OPENSCREEN ERIC network by FMP Berlin, Institute of Molecular and Translational Medicine, Fundación MEDINA, USC and Institute of Molecular Genetics. Bioactive compounds over Hep G2 and U2-OS and 4 sites. Preprint: doi.org/10.1101/2024.0…

OPEN SOURCE ALPHA FOLD CLONE JUST DROPPED

Let me introduce: InstanSeg 🦠🔬💻👩‍🔬 This *would* have been a short thread about Thibaut Goldsborough’s PhD work… but he solved too many problems. Now it's a long thread about 2 preprints, a whole new approach to cell segmentation & #opensource software to make it easy to use

📣 𝐋𝐚𝐬𝐭 𝟑 𝐝𝐚𝐲𝐬 𝐭𝐨 𝐫𝐞𝐠𝐢𝐬𝐭𝐞𝐫!!! 😉 We look forward to seeing you at 5th FLxFlow Course: Principles and Applications of Flow Cytometry. 𝑨𝒑𝒑𝒍𝒚 𝒏𝒐𝒘: flxflow.pt/2024/05/15/5th…

Hey #teamtomo!Our 1st❄️🔬work Human Technopole is finally out!🥳nature.com/articles/s4159… Serialized On-grid Lift-In Sectioning for Tomography(SOLIST) enables a biopsy at the nanoscale and high-res❄️STA from🧍‍♀️organoids and🐭liver, brain and heart tissue!Thread by Gaia Perone below!

Are you looking for a pos-doc? We just opened two positions to study bacteria evolution in the gut in Gordo's Lab at the Gulbenkian Institute ;)! See gimm.pt/jobs/postdocto… gimm.pt/jobs/postdocto…

🚨🖥️🦠 OMG! #SReD is live and SHREDDING! Tap into the power of structural repetition to see new things! I'm clearly biased, but our method sure isn't! Let me show you what it can do 🧵👇doi.org/10.1101/2024.0… #opensource #microscopy #biology

🚀Applications are open for the 2025 edition of our EMBL Deep learning course for microscopy image analysis. This time, we will focus on more advanced methods so if so if you already know how to train models you will be in for a treat! Deadline Nov 25th

🔬🚀 Check out the FocalPlane article on how #SReD can improve your #microscopy research! Bonus content on the story behind the #software if you're curious! focalplane.biologists.com/2024/09/23/str…

The BioImageComputing (#BIC) workshop European Conference on Computer Vision #ECCV2026 in Milan is in full swing! Lots of interesting posters and talks! 🤩 🔬 🤖

We are opening two positions at the Bioimage informatics unit – BIIF! BIIF is a unit of SciLifeLab , and also part of the National Bioinformatics Infrastructure Sweden (NBIS) . What can you do while working with BIIF?

Now we are one... starting a new adventure! GIMM - Gulbenkian Institute for Molecular Medicine - has just been created by merging IGC and iMM. On the verge of discovery GIMM Foundation | gimm.pt

#bioimageanalysis friends, the deadline to submit your tutorial to the FREE Virtual I2K meeting is tomorrow- head to i2kconference.org/virtual to learn more. Help learners all over the world discover your tool/workflow! Please RT and spread the word for trainers and learners both!

I am super excited to present our ongoing work in ʝuɢ lab with Ashesh on diffusion models for microscopy data at #I2K2024 next week! Visit us to find out how diffusion models can enhance image restoration in microscopy. 😃 events.humantechnopole.it/event/1/contri…

Life scientists! The 3rd (and last) AI4Life Open Call is officially open! 🎉 We are offering deep learning support for bioimage analysis. Apply now! 🔗 ai4life.eurobioimaging.eu/third-open-cal… ⏳ Deadline: December 10, 2024 European Research Executive Agency #AI #Bioimaging #Imaging #ImageAnalysis #DeepLearning

Our team in Ghent wants to grow!! If you would be interested in doing electron microscopy with us, please check out the job posted below. Come join a great team VIB Technologies! Trust me - it is really a great place to work! jobs.vib.be/j/94535/electr…

Major update of #BigStitcher & #BigStitcherSpark: - 10x faster fusion - cloud support (S3 & GS) - improved interest-point alignment - worst error visualization - improved virtual image splitting - Zarr/N5/HDF5 export - consolidated menu structure #OSSI HHMI | Janelia Fiji