Nour Almadhoun Alserr
@nmadhoun
Senior Researcher @ETH🇨🇭, Data Privacy and Bioinformatics🧬👩💻, Ex-Research Intern @cwru 🇺🇸, PhD @CS_Bilkent 🇹🇷, Mom of Hasan & Adam👨👩👦👦.
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https://scholar.google.com/citations?user=b8FYBJMAAAAJ&hl=en&oi=ao 01-03-2011 08:46:11
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On June 26, 2000, the draft human genome sequence was announced. 21 years later, on May 27, 2021, the complete human genome sequence was published (as a preprint) biorxiv.org/content/10.110… Now we finally have a whole genome after talking about it for 2 decades Adam Phillippy et al👋👋
Watch some lectures in our Seminar in Computer Architecture this semester: Lecture 4: Example Paper Review "GateKeeper" with Mohammed Alser 🇵🇸 (Hiring): youtu.be/i9dCUOpgMms Course schedule: safari.ethz.ch/architecture_s… Course playlist: youtube.com/playlist?list=… ETH Zurich Onur Mutlu
Our recent preprint on "Near-Optimal Privacy-Utility Tradeoff in Genomic Studies Using Selective SNP Hiding" is now online: arxiv.org/abs/2106.05211 GitHub code: github.com/CMU-SAFARI/SNP… Nour Almadhoun Alserr, Gulce Kale, Onur Mutlu, Oznur Tastan, Erman Ayday ETH Zurich CS@Bilkent
Join us today for our talk on "COVIDHunter: An Accurate, Flexible, and Environment-Aware Open-Source COVID-19 Outbreak Simulation Model" Paper: people.inf.ethz.ch/omutlu/pub/COV… Code: github.com/CMU-SAFARI/COV… Premiere 5pm CEST: youtube.com/watch?v=dKu65y… Mohammed Alser 🇵🇸 (Hiring) Onur Mutlu Nour Almadhoun Alserr ISCB News
Review of read alignment tools from Mohammed Alser 🇵🇸 (Hiring), Jeremy Rotman, Onur Mutlu , Serghei Mangul #UkraineWillWin 🇺🇦🇲🇩🇺🇸 & co. They assess 107 methods published since 1988, comparing different approaches. They look at computational efficiency and speed. Most tools use hashing. genomebiology.biomedcentral.com/articles/10.11…
I am speaking at recomb2021 about the urgent need for building intelligent architectures for genome analysis. This is a fascinating topic that is very close to my heart. The recording & slides will be online. recomb2021.org/program #recomb2021 SAFARI Research Group Onur Mutlu
1/n It is fascinating to see how sequencing technologies shape algorithms over last 33 years. Check out our latest paper on developments in read alignment algorithms since 1988 (my birth 😅) until now Genome Biology: doi.org/10.1186/s13059… Onur Mutlu SAFARI Research Group ETH CS Department
12/n Learn more about this topic and (re-)watch my lecture from Computer Architecture course at ETH Zürich ETH Zurich, Fall 2020: youtube.com/watch?v=ygmQpd… Links to the slides are available in the video description 😉.
SAFARI Live Seminar: "Accelerating Genome Sequence Analysis via Efficient Hardware/Algorithm Co-Design" w/ Damla Şenol Çalı Today, 6pm Zurich time. Livestream: youtube.com/watch?v=MfpLmr… Abstract: safari.ethz.ch/safari-live-se… All welcome to join. SAFARI Research Group Mohammed Alser 🇵🇸 (Hiring) Nour Almadhoun Alserr
Mobile Genomics Course - Lecture 5: Shouji (Fall 2021) Live at 10am Zurich time, Nov 10. We will cover the Shouji pre-alignment filtering algorithm and its FPGA acceleration. Paper: people.inf.ethz.ch/omutlu/pub/sho… youtube.com/watch?v=I7bc-K… SAFARI Research Group ETH CS Department ETH Zurich Mohammed Alser 🇵🇸 (Hiring)
We are glad to have Serghei Mangul #UkraineWillWin 🇺🇦🇲🇩🇺🇸 visiting us physically all the way from USC. Serghei will give talks and discuss new directions on bioinformatics research. 📢Join us tomorrow Nov 11, 11am ETH Zurich ETZ K91 OR Livestream: youtube.com/watch?v=3IhL8M… Onur Mutlu SAFARI Research Group
I delivered the keynote talk at #IC3INA 2021, #Indonesia🇮🇩 on "Rethinking Genome Analysis at Population Scale". The talk will be premiered tomorrow at 6 PM (GMT +1): YouTube: youtube.com/watch?v=DYirH5… Science Badan Riset dan Inovasi Nasional i3L_Official Pusat Riset Informatika BRIN SAFARI Research Group Onur Mutlu
We're excited to share our December newsletter with you: safari.ethz.ch/safari-newslet… We wish you a wonderful holiday season, and a new year filled with good health, happiness, creativity, optimism, and many great ideas that can change the world positively! Onur Mutlu ETH Zurich
We often reduce the exe. time of bioinf. tools, but never worry about their energy, memory footprint, carbon footprint, and data movement issues, which we now need more than ever to tackle! Check out our latest work sciencedirect.com/science/articl… Onur Mutlu SAFARI Research Group ETH Zurich
As with all our works, there is a large team of researchers behind this work, acknowledging each and every contribution of MSG. cryptic Can Fırtına Nour Almadhoun Alserr Haiyu Mao Gagandeep Singh Juan Gómez Luna Onur Mutlu SAFARI Research Group & the authors of all surveyed works.
