Lucas van Dijk
@lucasvandijk
PhD-candidate Bioinformatics TU Delft | Bacterial Genomics Lab at Broad Institute of MIT and Harvard. 🟦 @lucasvandijk.bsky.social
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https://lucasvandijk.nl 06-03-2009 14:39:30
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StrainGE, from Lucas van Dijk, Bruce Walker, Earl & co, for deconvolving strain mixtures from metagenomics sequencing. It can detect low-abundance strains at 0.1x coverage, and can give approximate ANI values. It can discriminate conspecific strains genomebiology.biomedcentral.com/articles/10.11…
On the cover of Nature Microbiology! A beautiful paper from our group led by Colin Worby identifying differences in the gut microbiomes of women with recurrent UTIs versus healthy controls, which may contribute to their increased susceptibility for an UTI.
From my colleagues Jonn, Kiran V Garimella @[email protected] and many others! Massive increase in RNA isoform sequencing throughput when using PacBio hifi sequencing!
