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New rat dataset! 🐀 Come explore the rat liver atlas on the UCSC Cell Browser. rat-liver-atlas.cells.ucsc.edu Special thanks to our submitter Delaram Pouyabahar! Delaram Pouyabahar #rat #singlecell #liver #atlas #transcriptomics

Our paper describing the first multi-strain atlas of the healthy rat liver is finally posted iScience journal cell.com/iscience/fullt…

Excited to see our strain-specific rat liver single-cell study out now + interesting computational workflow to dissect experimental factors in single cell data - sciencedirect.com/science/articl… with Delaram Pouyabahar #SaiChung Sonya MacParland #IanMcGilvray and the amazing liver team!

Our paper is out!!! cell.com/cell-genomics/… Congrats to all the authors and thank you Hani Goodarzi for the opportunity! Here is a short summary:

sciRED: Interpretable single-cell factor decomposition biorxiv.org/content/10.110…

Congratulations to our 2024 Dorrington Award Winners! 🥳 Graduate students Heta Lad, Delaram Pouyabahar and Justin Sing received the #award for their research on myopathy, the liver and protein modification. #UofT Learn more 👉 uoft.me/2024Dorrington…

There's a lot of excitement about foundation models and their ability to learn biology 🧬💻 But current tools for perturbation prediction perform worse than simple linear models! We need more careful benchmarking to make progress. biorxiv.org/content/10.110…

So excited to share the first paper from the lab! We identified CD34 as a marker of the heart’s SAN pacemaker cells enabling their isolation from stem cell differentiation cultures, advancing future disease modeling and biological pacemaker applications. nature.com/articles/s4146…

sciRED is now officially out Nature Communications !🚀 nature.com/articles/s4146… The peer-reviewed version includes several new analyses beyond our preprint, so check it out even if you’ve seen it before! Huge thanks to Gary Bader and Tallulah Andrews for their incredible guidance.