Dirk Benzinger (@dbenzingerd) 's Twitter Profile
Dirk Benzinger

@dbenzingerd

Postdoc at @TheCrick in the Briscoe Lab. Previously PhD student with @KhammashLab. Dynamic signaling, gene regulation, synthetic biology, and optogenetics.

ID: 730369025755234304

calendar_today11-05-2016 12:08:40

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Mustafa Khammash (@khammashlab) 's Twitter Profile Photo

Our work on synthetic signal-processing devices is now out authors.elsevier.com/a/1elT88YyDfj6…. We build optogenetic circuits that perform dynamic signal decoding and differential gene expression. Credit to Dirk Benzinger and S. Ovinnikov who did the work & European Research Council (ERC) ETH Zurich D-BSSE, ETH Zurich.

jared toettcher (@toettch) 's Twitter Profile Photo

it's great to see this out! feedforward loops are so powerful for building signal sensors & signal generators. some other examples: work from the Lahav lab on p53 decoding (embopress.org/doi/full/10.15…) and our biosensor for Erk pulses (sciencedirect.com/science/articl…)

Dirk Benzinger (@dbenzingerd) 's Twitter Profile Photo

Very happy to see our paper on "synthetic circuits for dynamic signal processing/decoding" out. Thanks a lot to Serguei Ovinnikov who did a lot of great work on this during his masters thesis and of course to Mustafa Khammash for his support and supervision.

Joaquina Delas (@joadelas) 's Twitter Profile Photo

First project in James Briscoe lab. We uncover two cis regulatory strategies used in neural progenitor cell fate choice. It starts with the question: when you have one signal directing several alternative fates, what is the chromatin regulation strategy? tinyurl.com/ydbm76he

Joaquina Delas (@joadelas) 's Twitter Profile Photo

Come and work with us The Francis Crick Institute James Briscoe lab! Fixed-term Laboratory Research Officer (BSc or equivalent) Fun project understanding how cis regulatory elements control cell fate decisions in spinal cord development Closing 1st Aug! Please RT crick.wd3.myworkdayjobs.com/External/job/L…

Jake Cornwall-Scoones (@jake_cs_) 's Twitter Profile Photo

Great to see our work on self-organisation in ETX in print. A huge pleasure contributing the modelling to this work with Min Bao, Matt Thomson, Magdalena Zernicka-Goetz and many others on this project during my time at Caltech

Mustafa Khammash (@khammashlab) 's Twitter Profile Photo

Cybergenetic control of the unfolded protein response optimizes protein production in yeast. Pls. check out our bioRxiv preprint. biorxiv.org/content/10.110… #synbio #cybergenetics

Gregory Batt (@gregory_batt) 's Twitter Profile Photo

Sebas' PhD paper on automated turbidostats and optogenetics, secretion sweetspots and secretory burnout state, and on cybergenetics has just been posted on bioRxiv! biorxiv.org/content/10.110… #labautomation, #optogenetics, #bioproduction, #synbio, #cybergenetics

Mustafa Khammash (@khammashlab) 's Twitter Profile Photo

Optogenetic feedback control of the unfolded protein response (UPR) in yeast can significantly increase the yield of a difficult-to-fold protein. #synbio #optogenetics authors.elsevier.com/a/1gl%7E4_Oxxo… Credit to Moritz@CTSB and Dirk Benzinger & thanks to ETH Zurich D-BSSE, ETH Zurich European Research Council (ERC)

Optogenetic feedback control of the unfolded protein response (UPR) in yeast can significantly increase the yield of a difficult-to-fold protein. #synbio #optogenetics

authors.elsevier.com/a/1gl%7E4_Oxxo…

Credit to <a href="/moritzctsb/">Moritz@CTSB</a> and <a href="/DbenzingerD/">Dirk Benzinger</a> &amp; thanks to  <a href="/ETH_en/">ETH Zurich</a> <a href="/ETH_BSSE/">D-BSSE, ETH Zurich</a> <a href="/ERC_Research/">European Research Council (ERC)</a>
James Briscoe (@briscoejames) 's Twitter Profile Photo

Our latest: Deep dynamical modelling of developmental trajectories with temporal transcriptomics Experimental & computational methods for robust dynamical modelling of gene expression from single-cell transcriptomic data A thread 🧵 biorxiv.org/content/10.110…

Katherine W. Rogers (@katwrog) 's Twitter Profile Photo

Allison Saul explains how "Diamond IFFLs are a Signaling Decoder's Best Friend" in the latest UDS Writing Club post! Summary of a dazzling paper by Dirk Benzinger & Serguei Ovinnikov in the Mustafa Khammash 💎 kwrogers-lab.org/uds-writing-cl…

<a href="/allison_saul_/">Allison Saul</a> explains how "Diamond IFFLs are a Signaling Decoder's Best Friend" in the latest UDS Writing Club post! Summary of a dazzling paper by <a href="/DbenzingerD/">Dirk Benzinger</a> &amp; Serguei Ovinnikov in the <a href="/KhammashLab/">Mustafa Khammash</a> 💎 kwrogers-lab.org/uds-writing-cl…
Andreas Milias-Argeitis (@andreas_milias) 's Twitter Profile Photo

Please RT We have an open PhD position in our group to study how growth regulators interact with the cell cycle. If you are interested, check the job ad to apply: rug.nl/about-ug/work-…. For any questions, feel free to contact me. Deadline is October 2nd.

Rubén Pérez-Carrasco (@2piruben) 's Twitter Profile Photo

🪧 Join our research group! We're looking for a postdoc interested in inference of cell competition strategies 🦠⚔️🦠using agent-based models and deep learning in collaboration @Tristan_AR. Do not hesitate to DM (and RT!)

Teresa Rayon (@t_rayon) 's Twitter Profile Photo

🚨we’re looking for a Postdoc (2-years initially) to develop a project on dev. tempo in mouse embryos 🐭 ⌛️ 📩 drop an email for further info Link: babrahaminstitute.livevacancies.co.uk/#/job/details/… Closes Jan 31st 🔁Please RT

🚨we’re looking for a Postdoc
 (2-years initially) to develop a project on dev. tempo in mouse embryos 🐭 ⌛️ 

📩 drop an email for further info

Link: babrahaminstitute.livevacancies.co.uk/#/job/details/…

Closes Jan 31st

🔁Please RT
Joaquina Delas (@joadelas) 's Twitter Profile Photo

I am excited to share that I will be starting my lab at UCL as part of the LMCB UCL Laboratory for Molecular Cell Biology in 2024. We will be studying how cis-regulatory elements controls cell fate decisions during development. We are recruiting at all levels. Learn more and reach out!

I am excited to share that I will be starting my lab at UCL as part of the LMCB <a href="/LMCB_UCL/">UCL Laboratory for Molecular Cell Biology</a> in 2024. We will be studying how cis-regulatory elements controls cell fate decisions during development. We are recruiting at all levels. Learn more and reach out!
Giulia Boezio (@giulsboezio) 's Twitter Profile Photo

🚨Meeting alert! Do you study cell lineages? In development, cancer, growth, regeneration? Join our The Royal Society meeting “Cell lineages across scales, space & time": barcoding, somatic tracing, imaging, modelling. Submit abstract, engage with leading speakers & win prizes!

🚨Meeting alert!

Do you study cell lineages?
In development, cancer, growth, regeneration? 

Join our <a href="/royalsociety/">The Royal Society</a> meeting “Cell lineages across scales, space &amp; time": barcoding, somatic tracing, imaging, modelling. 
Submit abstract, engage with leading speakers &amp; win prizes!
Joaquina Delas (@joadelas) 's Twitter Profile Photo

🚨 The Delas lab UCL Laboratory for Molecular Cell Biology is officially recruiting 🥳 We will study how cis-regulatory elements control developmental cell fate choice, focusing on gene silencing. Funded by Wellcome. Postdoc advert closes on 12 March! ucl.ac.uk/work-at-ucl/se…