CryptoBench: Cryptic Protein-Ligand Binding Sites Dataset and Benchmark David Hoksza - CryptoBench introduces a benchmark dataset specifically designed for cryptic binding site (CBS) prediction, a challenging area in structural biology. substack.com/home/post/p-14…

R2DT 2.0 is now live! 🎉 This major update introduces exciting new features for RNA secondary structure visualisation, making it easier than ever to explore RNA structures. Learn more in our new preprint: biorxiv.org/content/10.110… #RNA #RNAstructure #bioinformatics

Very insightful perspective on open science from the point of view of the head of Czech Science Foundation Petr Baldrian at ELIXIR Czech Republic Annual Conference

✨We are hiring! ✨ We have a postdoc position open at the Charles University in Prague! If you are interested in memory consolidation and like to search for structure in neural data, get in touch! To read more about us, visit neam.mff.cuni.cz. Please RT 😊

Jak probíhá vývoj formátu PDF a kdo za ním stojí? 📅8.11.2024 🕒od 13:00 📍Malostranské nám. 25, učebna S9 Přednášky jsou otevřeny pro všechny. Budeme se na Vás těšit! Více informací na: pdfa.org/pdf-in-prague/ V případě otázek kontaktujte: [email protected]

Join us for the next #Bioinformatics seminar hosted by Matematicko-fyzikální fakulta Univerzity Karlovy and Faculty of Science of Charles University at Charles University! This week, Hana Rozhoňová will present on “The Genetic Code and Protein Evolvability.” Don’t miss it! 📅 Wed, Nov 6 🕕 17:20 More info: bioinformatics.cuni.cz/seminar

Join us for the next #Bioinformatics seminar hosted by Matematicko-fyzikální fakulta Univerzity Karlovy informatfyz and Faculty of Science of Charles University. Anu Shivalikanjli from EMBL-EBI will present on “Mapping Molecular Phenotypes with MorPhiC”. Don’t miss it! 📅 Wed, Nov 27 📷 17:20 More info: bioinformatics.cuni.cz/seminar

A new tutorial for Broad Institute Genomics 2 Proteins portal G2P is out! This month we focus on the APIs and software we are building to enable large-scale data access and bioinformatics/#MachineLearning applications 👇 1/2 youtube.com/watch?v=z8M6tM…

🔥Předposlední přednáška Juniorské Univerzity Karlovy byla ve znamení počítačového vývoje léčiv 💊 🔊 Doc. RNDr. David Hoksza, Ph.D. povídál o tom, jak se využívají počítačové metody ve vývoji léčiv. A proč mohou vést k lékům, které by klasickými metodami nebyly odhalitelné! 🎉

Join us for the next #Bioinformatics seminar hosted by Matematicko-fyzikální fakulta Univerzity Karlovy informatfyz and Faculty of Science of Charles University. Karel Sedlar from FEKT VUT v Brně will present on “Computational Analyses and Functional Annotations of Non-Model Bacteria”. 📅 Wed, Dec 11 🕕 17:20 bioinformatics.cuni.cz/seminar

Join us for the next #Bioinformatics seminar hosted by Faculty of Science of Charles University and Matematicko-fyzikální fakulta Univerzity Karlovy . Gerardo Tauriello from SIB: “Beyond SWISS-MODEL - Modelling, Benchmarking and Working with Computed Structure Models in the AlphaFold Era”. 📅 Fri, Jan 17, 10:00 bioinformatics.cuni.cz/seminar

1238 to go! Lego DNA 2.0: Double Helix History ideas.lego.com/s/p:c92cd95b49…

🚀 New Paper Alert! 🚀 𝐑𝟐𝐃𝐓: a comprehensive platform for visualising RNA secondary structure Check it out in Nucleic Acids Res: academic.oup.com/nar/article/53… Here’s why you should give it a try 🧵👇

If you’re submitting to the @NAR_Open Web Server/Database issue and need to add PMC and DOI links to your #BibTeX as required—but the provided Perl script isn't working—I’ve created a small Python script to help you out! 🔗 github.com/davidhoksza/bi…

💻🧬Rodina Hajičova má matematickou lingvistiku opravdu v genech. Přečtěte si unikátní trojrozhovor s vedoucím obřího projektu OpenEuroLLM Jan Hajic, jeho maminkou Evou a synem Janem Institute of Formal and Applied Linguistics Matematicko-fyzikální fakulta Univerzity Karlovy Univerzita Karlova ukforum.cz/rubriky/veda/9…

David Hoksza zkoumá proteiny, ale není biolog, nýbrž informatik. Na katedře softwarového inženýrství vyvíjí nástroje, které umožňují vizualizovat proteinové struktury nebo na nich identifikovat místa, kde se vážou léčiva.🧬 🔗matfyz.cz/clanky/do-nitr…

Join us for the next #Bioinformatics seminar hosted by Faculty of Science of Charles University and Matematicko-fyzikální fakulta Univerzity Karlovy. Nora Martin from Centre for Genomic Regulation (CRG) : “How does the structure of a genotype-phenotype map shape variation and evolutionary processes?”. Don't miss it! 📅 Wed, Apr 30 ⏲️17:20 bioinformatics.cuni.cz/seminar

Our paper on the updated PrankWeb, a web app for protein binding site prediction using P2Rank, is out in @NAR_Open! Now with AutoDock Vina docking integration. Try it: prankweb.cz Paper: doi.org/10.1093/nar/gk… GitHub: github.com/cusbg/prankweb David Hoksza Radoslav Krivak