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Our newest journal article is now out! Shout out to incredible Ph.D. Tri-I CBM from the lab, Dr. Dmitry, and wonderful Weill Cornell Medicine collaborator Hagen Tilgner / @[email protected]: doi.org/10.1093/bioinf…

1/ Not every #oncogene acts like an oncogene – context is key. Here, with the Varmus Lab Wang Congming Weill Cornell Medicine Meyer Cancer Center, we demonstrate an ‘oncogene’ in the wrong cell type doesn’t act like an oncogene anymore. science.org/doi/epdf/10.11…

🎙️ Alon Millet's talk is on YouTube! "An exhausted-like #microglial population accumulates in aged and #APOE4 genotype Alzheimer’s brains" (Ref: Immunity 2023) Alon Millet Jose H. Ledo Sohail Tavazoie Rockefeller University Tri-I CBM youtu.be/IiQK_NrjN7o #Openscience

Congratulations to our brilliant David Hoyos Tri-I CBM The Halvorsen Center for Computational Oncology Memorial Sloan Kettering Cancer Center on being named a Hertz Fellowship Finalist!

So proud to see the defense of Mar (Mohith) who worked in our lab on new algorithms for detecting and phasing 8-oxo-guanosine and other base modifications from Oxford Nanopore data from Earth and in space Tri-I CBM #defense Weill Cornell Medicine

✨New paper alert Cancer Discovery✨ - GDD-ENS distinguishes 38 cancer types (>96% of patients) w/ high accuracy using routinely collected DNA sequencing data #MSKIMPACT and generalizes well to other gene panels w/o retraining - CNAs (arm/gene level) are key features for classification

Paper out!📢 Anupriya Singhal and #HannahStyers from the lab find acute resistance to targeting KRAS in pancreas cancer is surprisingly driven by a classical epithelial state. Co-targeting classical cells and KRAS augments response - clinically important! aacrjournals.org/cancerdiscover…

Metient reconstructs the migration histories of metastatic cancers by scoring a Pareto front of parsimonious histories. It can be auto-calibrated to different cohorts. Superstar PhD student Divya Koyyalagunta will present at #ISMB2024 in MLCSB Check it out: biorxiv.org/content/10.110…

We are at #ISMB24 in Montreal ! Come listen to Tri-I CBM Marjorie Roskes talk at #HitSeq on Sun at 5:20 pm, visit Weiling's poster A-133. Or shoot me a message if you would like to chat about opportunities in the lab.

We are humbled to have our lab's work featured this week on the cover of nature (below), with many, many people to thank. First, the stellar crew of Inspiration4, Jared Isaacman, Hayley Arceneaux, Chris “Hanks” Sembroski, Dr. Sian “Leo” Proctor, who donated time, blood, fluids, and sweat for

During National Postdoc Appreciation Week, we post social cards and profiles to celebrate our remarkable #MSKPostdocs (MSKPDA). A week is not enough, so we dedicate ALL of September to our outstanding scientists! Stay tuned to learn more about them. Memorial Sloan Kettering Cancer Center #NPAW2024🎉

Our paper is out! Automatic ploidy prediction and quality assessment of human blastocysts using time-lapse imaging .. congratulations to my star PhD student and first author Suraj Rajendran Tri-I CBM Weill Cornell GSMS WCM Englander Institute for Precision Medicine Weill Cornell Medicine nature.com/articles/s4146…

AutoFocus, a project YEARS in the making, is finally out in Communications Biology! When clustering multi-omic data, systemic correlation bias focuses on intra-omic clusters and excludes multi-omic interactions - so we designed an algorithm to help change the focus: nature.com/articles/s4200…

Excited to publish my book chapter with Chris Mason Springernomics and edited by VIJAY SONI and Dr. Akhade on Role and Relation of Microbiome to address AMR.

Happy to announce that PERT is now published in Nature Communications ! With PERT, we explore replication timing variability (Fig 3-4), chrXi reactivation (Fig 5), and how S-phase fractions struggle to approximate clone fitness (Fig 6). nature.com/articles/s4146… 1/n

Hi all, I am currently on the academic job market. I am a postdoctoral researcher in Dr. Christina Leslie's lab at the Computational and Systems Biology Program at Memorial Sloan Kettering Cancer Center. My research focuses on deciphering causal and dynamic gene regulation

💥💥💥New preprint 💥💥💥on the EuPRI resource. Where we reconstruct the motifs for 34,736 RBPs and study their function and evolution. Joint work with Tim Hughes (Toronto), Matt Weirauch, @LXandR_, Deb Ray, Kaitlin Laverty and many more. More details to come