🔥The 9th Round of Easy Loan, Earn $40 Reward is in progress❗️ ⏰ Promotion Period: January 15th - Feburary 15th, 2025 👉 Register now and check more details at gate.io/campaigns/358

Excited to be (back) EMBL-EBI - now as Head of Research. I very much look fwd to helping nurture research (leveraging its trove of resources #services + unique possibilities within @EMBL) + support EMBLebi as a whole as part of its Senior Management Team (congrats Jo McEntyre!)

Call for Proposals for the scverse Conference 2024! 📅 Dates: 15 MAY - 30 JUN Types: Posters & Talks (10-15 min), Workshops (30-45 min demos), Birds-of-a-Feather sessions, Sticker Contest Submit abstracts online. Join us and share your work! #scverse2024

We are looking for an Xarray community developer to work at Earthmover to focus on building connections, both technical and social, between the Xarray project and the biomedical research community. jobs.gusto.com/postings/earth…

I am excited to present Polaris PyData London!✨ I look forward to share more about the benchmarking platform we are building Valence Labs and how this leverages zarr_dev as a universal data format. london2024.pydata.org/cfp/talk/Y3PTM…

Heads up! Rob Patro 𝕐, associate professor at UMD and key player in computational genomics, will speak at #scverse2024! His work on tools like salmon, alevin, and simpleaf is groundbreaking. Catch his insights on genomic algorithms! Register here: scverse.org/conference2024…

🗞️Promoting open-source, from inria to :probabl. Open-source efforts around scikit-learn at @inria are spinning off to a new enterprise, :probabl., in charge of sustainable development of a data-science commons. Some context and details: gael-varoquaux.info/programming/pr…

🌟 Join me at #Scverse2024 for the "GPU-Accelerated Single-Cell Analysis with rapids-singlecell" workshop! 📍 Munich, Germany 🗓️ Sept 10-12 Don't miss out! Register now: [scverse.org/conference2024/] Explore the toolkit: [github.com/scverse/rapids…] scverse

What does the future of spatial omics data processing pipelines look like ? Meet Sparrow, our new human-in-the-loop interactive pipeline that facilitates better quality control, improves segmentation and leads to better downstream analysis Lotte Pollaris biorxiv.org/content/10.110…

Triple Pangeo sprint going on today at SciPyConf ! We've got groups working on Xarray -DataTree, Cubed, and zarr_dev VirtualiZarr all sat together!

MDAnalysis partnered with the Molecular Sciences Software Institute (MolSSI) to offer a free, hybrid workshop titled Moving from User to Developer: Analyzing Molecular Simulations and Building New Tools. All workshop materials are publicly available here: hubs.la/Q02GNt5r0

My fellow Democrats, I have decided not to accept the nomination and to focus all my energies on my duties as President for the remainder of my term. My very first decision as the party nominee in 2020 was to pick Kamala Harris as my Vice President. And it’s been the best

ICYMI SciPyConf... quak 🦆 is a scalable, interactive data table built with #anywidget - 🖱️ crossfilter & sort millions of rows in real time - 🔄 view any ApacheArrow __dataframe__ - ⚡ powered by Interactive Data Lab mosaic & DuckDB - 📓 materialize sub-views back in Project Jupyter

The Xarray data model now supports vector data cubes! 🎉 Check out our blog post discussing + demonstrating this exciting development. Thank you to Xvec and others across the OS community for their work making this possible! 👏earthmover.io/blog/vector-da…

Hot take 🧵 on the Anaconda academic licensing fiasco... Anaconda provides a huge amount of value to large, well-funded academic research institutions who are absolutely fine with paying big license fees to Mathworks, Intel, etc. for software. 1/

Which is more convenient: viewing the "Visium HD bins" as a collection of millions of vector geometries, or as a large multi-channel image given their grid arrangement? In the webinar, Quentin BLAMPEY, Wouter-Michiel Vierdag, and I will discuss code and use cases for both approaches.

Next Tuesday at 2024-10-01 18:00 CEST we are kicking off this semester's community meetings. @danielcjones will talk about about proseg, a method for cell segmentation in in-situ spatial transcriptomics. For more information check the GitHub repo: github.com/dcjones/proseg

Out today from the Gehlenborg lab! Vitessce is an interactive web-based visualization framework for exploration of multimodal and spatially resolved single-cell data. nature.com/articles/s4159…

our work on vitessce is out in Nature Methods!