Come learn about cBioPortal at #AACR2023: Talks on Saturday by Niki Schultz at 8:30 AM in Room W224 (#NCIITCR session) as well as by Tali Mazor in Room W311 at 8:45 AM (AACR Project GENIE session), a poster on Tuesday morning, and a booth in the exhibitor space (#1943).

Hope you caught our poster abt a new resource linked to OncoKB™ & cBioPortal’s Genome Nexus called ReVUE = Repository of Variants w/ Unexpected Effects @ #AACR2023. Led by 🔧 Ino de Bruijn 🧬 Niki Schultz & me Funded by the ICI Go to cancerrevue.org & submit variants!

These two incredible scientists, Dr. Sarah Suehnholz OncoKB™ Senior Scientist & Ritika Kundra, Lead Software Liaison, showcasing OncoKB™ w/ dedication & expertise. Meet them at booth 28161 or #ASCO23 poster #171 in Hall A poster 1pm. Daniel Gerlach we will connect later I’m sure!

Work with the amazing Joseph Minhow Chan, MD, PhD!!

Check out the tools! Lmk if you'd like to add any or hate/love the UX :)

Evaluation of software impact designed for biomedical research: Are we measuring what's meaningful?ncbi.nlm.nih.gov/pmc/articles/P…

Excited to share Monopogen that performs SNV calling from single-cell DNA/RNA/ATAC-seq data, to enable cellular population genetics. nature.com/articles/s4158…. Thanks Rui Chen, Nicholas Navin, Shyam Prabhakar Lab, Li Ding, Chan Zuckerberg Initiative CZI Science, #HTAN, Nature Biotechnology collaborators/friends.

It's out y'all! A new cBioPortal paper! Super grateful for the opportunity to follow in the footsteps of JJ Gao & Ethan Cerami! The article highlights work from tons of people to improve joint longitudinal genomic & clinical data analysis in cBioPortal!

An enormous thank you to @SamVolchenboum and his Data for the Common Good (home of the PCDC) team for hosting #ITCR2023 at The University of Chicago this year. It was an amazing three days with this #CancerInformatics community! itcr.cancer.gov

Single Cells as text? We developed Cell2Sentence, a method that allows training of Large Language Models on single-cell data! biorxiv.org/content/10.110… With @danielflevine Syed Rizvi sachalevy Rahul Dhodapkar @YaleSEAS Yale School of Medicine #AI #ML #NLP #genomics #CompBio #singlecell

Work with us on the open source cBioPortal for a summer!

Stay up to date on the latest cBioPortal news!

If you want to learn more about AACR Project Genie while at #AACR24, read from 🔧 Ino de Bruijn 🧬 on analyzing GENIE data in cBioPortal, and a pair of reviews discussing the use of big data in cancer research: bit.ly/4anrBDq bit.ly/3VKNSGN bit.ly/43Mg3ah AACR

@Inodb (Manager, Bioinformatics Software Engineering, Memorial Sloan Kettering Cancer Center) will be joining us at #FOGBoston to discuss big data sharing in cancer genomics. Want to hear more? Register now: hubs.la/Q02r2jHL0

On my way to the Festival of Genomics & Biodata in Boston! Will moderate a session on Data Sharing and present on Longitudinal Clinico-Genomic Data Analysis in cBioPortal leveraging #AACRProjectGENIEBPC data Registration is free, so check it out and come say hi!

Analysis & Visualization of Longitudinal Genomic & Clinical Data from the AACR Project GENIE Biopharma Collaborative in cBioPortal—read this article featured in the AACR Journals Collection on AI and Data Science. bit.ly/3YrGjG4 🔧 Ino de Bruijn 🧬 cBioPortal #openaccess

This paper is the result of an incredibly fun collaboration with Sandro Santagata and Peter Sorger. Led by the fantastic Tanjina Kader 🎗️ with Jia-Ren Lin, we provide a pre-cancer atlas of Fallopian tube precursors to HGSOC. Don't miss our cbioportal entry of all the data!

Ronny Drapkin Tanjina Kader 🎗️ Jia-Ren Lin YES! Excellent teamwork studying the development of fallopian tube precursors to high grade serous ovarian cancer. Very proud of the impressive effort by Tanjina Kader 🎗️, Jia-Ren Lin, Clemens Hug, and team. A total joy to work with them and colleagues. And a delight to be able to

Learn about cBioPortal at #AACR25 next week! Visit us in the Exhibition Hall (Booth 3703) and come see our poster on Sunday afternoon presented by 🔧 Ino de Bruijn 🧬 in the AACR Project GENIE Use Cases Session (Section 48, Board 3).