Unsupervised integration of multimodal dataset identifies novel signatures of health and disease biorxiv.org/cgi/content/sh… #bioRxiv

Our work on the unsupervised analysis of the data from 1200+ individuals is out!

Our new preprint on some pitfalls of single-cell clustering! Clustering algorithms force separation, and hence post-clustering differential expression analysis on the same dataset generates artificially low p-values Govinda Kamath David Tse biorxiv.org/content/early/…

Spectral Jaccard Similarity: A new approach to estimating pairwise sequence alignments biorxiv.org/cgi/content/sh… #bioRxiv

Experiment: represent 8 different MHC from GRCh38 in a single "sketch graph".

Delighted to say that my work with Tavor Baharav and Ilan Shomorony on sequence alignment through a spectral algorithm has been accepted into @recomb2020 dx.doi.org/10.1101/800581

Proud to have been part of this work!

Our recent work, Bandit-PAM, was accepted to NeurIPS! It utilizes adaptive sampling to make PAM, one of the most popular k-medoids clustering algorithm, orders of magnitude faster. Great collaboration with Mo Tiwari James Mayclin Sebastian Thrun Chris Piech Ilan Shomorony

A recent paper with Ilan Shomorony on doing a rate-distortion analysis of min-hashing. We were a bit surprised it had not been done till now. arxiv.org/abs/2107.04202

New paper with Govinda Kamath on how to look at sketching and min-hashes from a rate-distortion perspective!

Illinois ECE Asst. Prof. Ilan Shomorony (Ilan Shomorony) earns prestigious U.S. National Science Foundation CAREER Award to better understand genomic data problems Learn more 🔗 ece.illinois.edu/newsroom/news/…

Proud of this work with Mo Tiwari, Martin Jinye Zhang and others!

Join us for the 6th Health Data Analytics Summit! "Generative AI: A Promising Catalyst for Healthcare?" Wednesday, April 5, 8:45am to 3pm (CT) More information and registration here: healtheng.illinois.edu/healthdatasumm…

Want something better than k-means? I'm happy to announce our SOTA k-medoids algorithm from NeurIPS 2020, BanditPAM, is now publicly available in Python, R, and C++! `pip install banditpam` or `install.packages("banditpam")` and you're good to go! 1/n

Thrilled that a paper from my PhD, "Faster Maximum Inner Product Search in High Dimensions" has been accepted to ICML 2024! In the paper, we accelerate state-of-the-art for the Maximum Inner Product Search (MIPS) problem. MIPS is a core subroutine in systems like recommendation

Beautiful HINGEs: Optimal repeat resolution w new assembler! Nice work by Govinda Kamath et. al. in Genome Research genome.cshlp.org/content/early/…

"HINGE: Long-read assembly achieves optimal repeat resolution" #GRAssembly Govinda Kamath Ilan Shomorony Fei Xia genome.cshlp.org/content/early/…

HINGE: The most Inspiring de novo assembler in last year! x.com/aphillippy/sta…