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Predicting gene expression from DNA sequence using deep learning models | Nature Reviews Genetics nature.com/articles/s4157…

Trait‐Based Life History Strategies Shape Bacterial Niche Breadth - Peng - Advanced Science - Wiley Online Library advanced.onlinelibrary.wiley.com/doi/full/10.10…

Gut microbiota-derived short-chain fatty acids and their role in human health and disease | Nature Reviews Microbiology nature.com/articles/s4157…

Tutorial: guidelines for the use of machine learning methods to mine genomes and proteomes for antibiotic discovery | Nature Protocols nature.com/articles/s4159…

Dietary fibre counters the oncogenic potential of colibactin-producing Escherichia coli in colorectal cancer | Nature Microbiology nature.com/articles/s4156…

Genome diversity and signatures of natural selection in mainland Southeast Asia | Nature nature.com/articles/s4158…

Ultrafast and accurate sequence alignment and clustering of viral genomes | Nature Methods nature.com/articles/s4159…

Shigella flexneri evades LPS ubiquitylation through IpaH1.4-mediated degradation of RNF213 | Nature Structural & Molecular Biology nature.com/articles/s4159…

Targeting symbionts by apolipoprotein L proteins modulates gut immunity | Nature nature.com/articles/s4158…

Dynamics of bacterial operons during genome-wide stresses is influenced by premature terminations and internal promoters | Science Advances science.org/doi/10.1126/sc…

A Salmonella subset exploits erythrophagocytosis to subvert SLC11A1-imposed iron deprivation: Cell Host & Microbe cell.com/cell-host-micr…

Composition and liquid-to-solid maturation of protein aggregates contribute to bacterial dormancy development and recovery | Nature Communications nature.com/articles/s4146…

A global atlas and drivers of antimicrobial resistance in Salmonella during 1900-2023 | Nature Communications nature.com/articles/s4146…

Multidrug-resistant Shigella flexneri outbreak affecting humans and non-human primates in New Mexico, USA | Nature Communications nature.com/articles/s4146…

West African–South American pandemic Vibrio cholerae encodes multiple distinct phage defence systems | Nature Microbiology nature.com/articles/s4156…

Psychological stress-induced systemic corticosterone directly sabotages intestinal stem cells and exacerbates colitis | Cell Discovery nature.com/articles/s4142…

Functional biogeography of marine microbial heterotrophs | Science science.org/doi/10.1126/sc…

PIGEON: a statistical framework for estimating gene–environment interaction for polygenic traits | Nature Human Behaviour nature.com/articles/s4156…