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I handed in my 👩‍🎓 thesis last week. The defense still awaits, yet, a decade at uni is coming to a close. 🫠 On page 1, the opening of Chopin’s Nocturne No. 20 Op. posth. decorates my “dedication” quote (also by him). I made a bet/promise to share that. So… aquí está ✨

I was always skeptical of single-cell data simulation methods because we still have lingering questions about what exactly the readout is (e.g., it's not a uniform sampling of active genes in a cell). Good to see work on it. genomebiology.biomedcentral.com/articles/10.11…

Had a real blast being a part of this - more than at many a “normal” conference. Nothing like coming together with old & new faces, smart minds & good vibes to code! Here’s to: R + 🐍 = 💙

Stoked about traveling -✈️-🇦🇹-✈️-🇸🇰- 🚕->🇺🇦 to Uzhhorod tomorrow and join fantastic faculty & students for BDS^3 Ukrainian Bio Data Science School 🇺🇦 #Uzhhorodnationaluniversity. Great initiative (!) & honor to be a part of it and share some single-cell joy 🙏

1.-9. Agreed 🙏 It’s been a wonderful, hopeful, mindful, eventful… emotional week in Uzhhorod 🇺🇦. And an impactful one (on many levels) - speaking for myself, but perhaps also anyone who shared in or heard about the experience. - Україно, ти була супер!

Bioconductor #bioc2023 in person registration is full but virtual registration is still available and includes access to the conference platform, 6 keynotes, short talks & 21 workshops. Student/Postdoc, $10 Faculty/Staff /Government, $50 Industry $75 bioc2023.bioconductor.org

Exciting news! Our paper is out in Nature Communications! 🥳 We investigated the cellular complexity of ulcerative colitis & Crohn’s disease using single-cell RNA-sequencing & CosMx Spatial Molecular Imaging 👩‍🔬🔬🖥️ Check it out! nature.com/articles/s4146…

🎉🧹 The #tidyomics ecosystem is official! Into #omic data analysis? Spanning #Seurat Bioconductor #SCE, #SE, #GRanges, #Citometry? Now, just use #tidyverse ! Co-led with Michael Love and Prof Tony Papenfuss WEHI (Walter and Eliza Hall Institute) #singlecell The preprint biorxiv.org/cgi/content/sh…

PLEASE consider joining our #singlecell #spatial genomics group CNAG in beautiful Barcelona! #lifeisbetteratthebeach Senior Laboratory Technician cnag.cat/jobs/single-ce… Postdoctoral Computational Biologist cnag.cat/jobs/single-ce… Please RT.

📣 Abstract submission is open for #EuroBioC2024 conference in Oxford 🇬🇧 Sep 4-6 eurobioc2024.bioconductor.org ! Submit an abstract by April 26 for 🟢 Short talk 🟢 Package demo 🟢 Poster 🟢 Contributed session 👉 Submit here openreview.net/group?id=bioco…

Yesterday's lab retreat with Holger Hayen's group took an exciting turn with a Calçotada feast! Calçotada is a festive gathering in Catalonia where people enjoy calçots, a type of sweet onion, grilled over an open flame and typically served with romesco sauce 🥰

Just got mail 🤩 Looking forward to reading this after that great talk you gave in UKR Alvis Brazma!

A little space odyssey today at the @nanostringtech Europe summit in Barcelona 🇪🇸 presenting our “so pretty” WTx CosMx SMI data - thanks for having us (@pascual_reguant Holger Heyn CNAG) & many a great insight on the future of going spatial (joe.beechem)!

WE ARE HIRING! Please consider joining my teams Omniscope and CNAG. We will open several positions for: Computational #Biology #Immunology #Pathology Message me if you are interested to join. omniscope.ai cnag.eu #lifeisbetteratthebeach

Today marks T-0 of #AC37 vs. “I should be writing” in BCN ⛵️ …yay!

"There are two ways of constructing a software design: One way is to make it so simple that there are obviously no deficiencies, and the other way is to make it so complicated that there are no obvious deficiencies."

I greatly enjoyed Helena Lucia Crowell’s deep dive into profiling colorectal cancers with spatial technologies. Big challenges still ahead, but it’s impressive just how far the field has come in the last 1-2 years. #AsconaSpatial2024

🌟A big thank you to all the speakers and participants for making the Ascona Workshop on Spatial and Temporal Statistical Modeling in Molecular Biology such a success! 🙌 Your insights, discussions, and ideas (shared during the scientific program or later with a glass of wine or

Come join us for a 1w SIB spatial omics workshop in beautiful Lausanne 🇨🇭 > t.ly/ilpUr < featuring Lars Borm Ahmed Mahfouz Mark R@markrobinsonca@{genomic.social,bsky.social} Yvan Saeys Rasool Saghaleyni @AnnaCSchaar Marco Varrone & more - deadline: Nov 1st.

Interested in benchmarking computational methods in computational biology, generally? Save the date, submit an abstract, join us next March in Ascona! Conference website: sites.google.com/view/ascona2025 Please retweet and/or tell your colleagues!