The 10 types of clustering that all data scientists need to know. Let's dive in:

Type 1 and Type 2 errors are confusing. In 3 minutes, I'll demolish your confusion. Let's dive in. 🧵

Infrared contact lenses allow people to see in the dark, even with their eyes closed. cell.com/cell/fulltext/… USTC Global Yuqian Ma & colleagues Cell

Paper2Poster Towards Multimodal Poster Automation from Scientific Papers

In our latest study, we look at how storing kidneys on ice before transplant can cause damage over time. We use #spatialtranscriptomics to characterize cold ischemia injury at multiple time points to reveal compartment-specific changes Preprint: biorxiv.org/content/10.110… 🧵👇 1/n

A really nice paper out today from the Wang lab describing OmiCLIP, a visual–omics foundation model linking H&E images and transcriptomics, and the associated Loki analysis toolkit. nature.com/articles/s4159…

New online! RNA polymerase II transcription compartments — from factories to condensates bit.ly/44osaMv

We wrote a review on Transposable Elements (TEs) and almost all aspects of TE silencing and their roles in biological processes & disease. With such a large scope you need excellent partners, so we are happy to have teamed up with ZZ Zhao Zhang & Vincent Yang Xu nature.com/articles/s4158…

Our spatial FFPE-ATAC-seq is now published in Nature Communications! With extensive optimizations, it performs well across diverse tissues, unlocking the vast FFPE archive for spatial epigenomics. Big congrats to Pengfei Guo Pengfei_Guo, Yufan Chen, and the team! nature.com/articles/s4146…

Epigenetics Update - Regulation of somatic hypermutation by higher-order chromatin structure bit.ly/4kWAwRo #Epigenetics #ChromatinConformation --- High-resolution insights without cell sorting; epigenometech.com

Structural variants in the 3D genome as drivers of disease. #StructuralVariants #3Dgenome #Genomics Nature Reviews Genetics nature.com/articles/s4157…

Cell-type deconvolution methods for spatial transcriptomics. #SpatialTranscriptomics #CellTypeDeconvolution #Bioinformatics #Genomics Nature Reviews Genetics nature.com/articles/s4157…

nature.com/articles/s4158…

A hypoxia-responsive tRNA-derived small RNA confers renal protection through RNA autophagy | Science science.org/doi/10.1126/sc…

Fibrosis: cross-organ biology and pathways to development of innovative drugs | ⁦Nature Reviews Drug Discovery⁩ ⁦Rafael Kramann, MD PhD⁩ nature.com/articles/s4157…

Glad to contribute to the peer review process and delighted to see this work published!🥰

The kidney stroma in development and disease nature.com/articles/s4158…

Skin fat plays by its own rules. We trace lineages (CellTagging), classify cell identity (Capybara), and model fate decisions (CellOracle) in our new Cell Stem Cell paper. It’s not a linear path. 🔗 doi.org/10.1016/j.stem…

An integrated single-nucleus and spatial transcriptomics atlas of the human hippocampus nature.com/articles/s4159…

🚨 Big news from @SusztakLab! Our paper is out in Nature Genetics: "From Million-Cell Atlases to One-Patient Reports" 🧬🧑‍⚕️Together with biostats wizard @NancyRZhang and physician-scientist trainee Konstantin Klötzer, we built a cross-species single-cell kidney atlas and analytics