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Nextflow pipelines now available at metashot.github.io link.springer.com/protocol/10.10…

"Large-scale quality assessment of prokaryotic genomes with metashot/prok-quality" is now online F1000Research, @donati_claudio, Nextflow f1000research.com/articles/10-82… github.com/metashot/prok-…

Our paper on General Pitfalls of Model-Agnostic Interpretation Methods for Machine Learning Models is on arxiv! 🎉🎉🎉 arxiv.org/abs/2007.04131 These pitfalls can really mess up your model interpretation. Our paper can help you avoid them. A thread. 1/n 🧵

The end of science as we know it? link.springer.com/chapter/10.100… A clear candidate for the IgNobel Prize Improbable Research ?

NEW: detailed thread on Europe’s winter wave and the contrast vs UK What’s happening? Why the difference? Can boosters help? First, the wave itself: cases, hospitalisations & deaths surging in Europe, several western countries shooting past UK 📈 Story: ft.com/content/974487…

In our new bioRxiv we used the largest fungal community dataset from global drylands to determine critical thresholds of community turnover in a changing world w/ Eleonora Egidi (she/her) ManuDelgadoBaquerizo Miguel Berdugo Emilio Guirado Davide Albanese Prof Brajesh Singh biorxiv.org/content/10.110…

This collaborative effort laid the foundation for my Marie Skłodowska-Curie Actions DRYLIFE and suggested that rock microbes might be particularly sensitive to increases in temperature and desertification. w/ManuDelgadoBaquerizo Eleonora Egidi (she/her) Jason Stajich Prof Brajesh Singh Laura Selbmann Davide Albanese FEMS

Genome sequencing provides new insights on the distribution of Erwinia amylovora lineages in northern Italy sfamjournals.onlinelibrary.wiley.com/doi/full/10.11…

Community assembly theory can help #soil #microbiome management. With James Stegen @donati_claudio Davide Albanese link.springer.com/article/10.100…

Glad to have worked on this! Eleonora Egidi (she/her) Claudia Coleine Miguel Berdugo Emilio Guirado Prof Brajesh Singh

Despite 30 knot winds at the Allan Hills, Antarctica, where ice cores up to 2,700,000 years old have been found, SpaceX Starlink continues to give the U.S. National Science Foundation-supported COLDEX team unprecedented connectivity! John Higgins @icy_pete

Terrific collaboration on #virome catalog from #Antarctica w/ Jason Stajich Cassie Ettinger, PhD Claudia Coleine ManuDelgadoBaquerizo Davide Albanese including samples sequenced by Joint Genome Institute #CSPcall Simon Roux Susannah Tringe

Metashot/aweMAGs is written using Nextflow, a framework for building scalable scientific workflows using containers allowing implicit parallelism (i.e. capability of automatically execute tasks in parallel) on a wide range of computing platforms.

Our new daniel rosales pipeline for eukaryotic MAGs github.com/metashot/awema…

The story of Dennis Ritchie, the man who invented C, co-created Unix, and is largely regarded as effectively influencing every software system we use on a daily basis. His death was largely ignored, overshadowed by Steve Jobs' death, one week before buff.ly/2pauBB2

A pile of pipelines: an overview of the bioinformatics software for metabarcoding data analyses. Preprint here: authorea.com/users/585035/a…

Lol, well played🤣

New #BioFunLab @csic IRNAS Sevilla Highly diverse and unknown viruses may enhance Antarctic endoliths’ adaptability microbiomejournal.biomedcentral.com/articles/10.11… Led by Cassandra L. Ettinger & Claudia Coleine Fantastic collaboration w/Laura Selbmann Davide Albanese Jason Stajich & more!

‼️ new paper in Molecular Ecology with a great collaborative and international experience! Special big thank to Sten Anslan Ali Hakimzadeh A pile of pipelines: An overview of the #bioinformatics software for #metabarcoding data analyses 🍄🦠🖥️🧬onlinelibrary.wiley.com/doi/full/10.11… list all authors 👇

From the lack of easy-to-use #bioinformatics tools from the early age of #metabarcoding, we have reached a phase of "a pile of pipelines" 🦋🧬🖥️ a fresh review by many of the developers of this pile -> onlinelibrary.wiley.com/doi/10.1111/17…