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Check out a video tutorial on how to do comparative interactomics analysis using the #FunCoup database of functional association networks FunCoup.org youtube.com/@sonnhammerlab youtu.be/gOhoc9M6rIw #genenetwork #proteinnetwork

Check out a video tutorial of online network-based PATHWAY ANALYSIS using PathBIX.sbc.su.se. It uses the #FunCoup network database for crosstalk analysis. FunCoup.org youtu.be/N7wHwAx3UAM youtube.com @sonnhammerlab #genenetwork #proteinnetwork

We'd like to remind Pfam users that we are not retiring the Pfam database, only the Pfam website! We are even preparing a new Pfam data release 😉

We have updated the InterPro protein viewer to the latest version of the Nightingale (v4). It allows to display the entries short names directly on the viewer. Have a look: ebi.ac.uk/interpro/prote…

Pfam is definitely still running: Pfam 36.0 is out and available through the InterPro website. It contains: ✨1191 new families ✨ 28 killed families ✨5 new clans Have a look: ebi.ac.uk/interpro/entry… Ftp: ebi.ac.uk/interpro/downl…

Vårt projekt "Spatially and temporally resolved gene regulation networks to understand liver cancer formation" var ett av de 224 som fick anslag från Cancerfonden! Tack alla som skänker gåvor till forskningen och gör detta möjligt! #tillsammansmotcancer #cancerfonden

PhD position in #Generegulatorynetwork inference from spatial transcriptomics to understand regulatory mechanisms that lead to cancer formation. Location: SciLifeLab in Stockholm, Sweden. #bioinformatics #ComputationalBiology For details, see sonnhammer.org/download/ads/P…

📢CALL FOR ABSTRACTS📢 🌟Abstract submission is now open for the Quest for Orthologs meeting #QFO8 which will be held at the University of Quebec in Montreal, Canada on July 17-18! More info at event.fourwaves.com/qfo8 Deadline: April 26.

Apply here before April 23: su.se/english/about-…

Quest for Orthologs in the Era of Biodiversity Genomics academic.oup.com/gbe/advance-ar… GBE (Genome Biology and Evolution)

A new generalized benchmark for (pathway) Enrichment Analysis, suitable for all four categories of EA methods is available, see doi.org/10.1093/bib/bb…

The human interactome represented by the FunCoup 5 network, illustrating interactions between 18,081 proteins connected by 5,036,826 links. By Davide Buzzao, Erik Sonnhammer, E. Persson, D. Morgan Enjoy the beauty of science? Check out our series #SciLifeLabArtTuesday on Instagram!

Release 2 of the GeneSPIDER package for #generegulatorynetwork analysis and inference is out, see doi.org/10.1093/nargab…. Includes new algorithms for large scale-free stable GRN generation and simulation of perturbed single-cell data.

We are pleased to announce the publication of a new Pfam paper: The Pfam protein families database: embracing AI/ML Nucleic Acids Res academic.oup.com/nar/advance-ar…

Release 6 of the FunCoup database of functional association networks is out! FunCoup.org 640 species and a huge increase in #generegulatory links. Website includes tools for disease module and pathway enrichment analysis, and expanded comparative interactomics.

How are different #orthology methods related and how well do they perform? Read about this and a new orthology benchmark in "New developments for the Quest for Orthologs benchmark service" academic.oup.com/nargab/article…

The paper on FunCoup 6 is now out in NAR: doi.org/10.1093/nar/gk…. It has 50x more #generegulatory links, 30x more species, and a completely revamped and extended website, still supporting the unique comparative interactomics mode. #FunCoup

Introducing the FunCoup Cytoscape App: multi-species network analysis and visualization, integrating the #FunCoup database with the Cytoscape ecosystem. academic.oup.com/bioinformatics…

PhD position open in #Generegulatorynetwork inference to develop new AI-based methods to improve simulations and accuracy. Location: SciLifeLab in Stockholm, Sweden. #bioinformatics #ComputationalBiology For details, see sonnhammer.org/download/ads/o…