
WDL Dev Team
@wdl_dev
WDL (pronounced widdle) is a workflow definition language designed from the ground up as a human-readable and -writable way to express tasks and workflows.
ID: 759109456202461188
https://software.broadinstitute.org/wdl/ 29-07-2016 19:32:52
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Cool to see Cromwell and WDL Dev Team on display at #sc18 sc18.supercomputing.org/presentation/?…

On my way home after a fabulous GATK Dev Team workshop in Copenhagen. Looking forward to get started implementing #GATK4 in our clinical workflow back home. Also really impressed by #WDL, #Cromwell, and #FireCloud. Will definitely try running “FiveDollarGenome” on my own genome data.

If you maintain WDL Dev Team workflows, "miniwdl check" can speed up your code/test/debug loop by detecting mistakes and oversights through static code analysis. Covers task shell scripts as well as WDL wiring. Early days; give it a try and file issues: github.com/chanzuckerberg…

GitHub sandbox project for creating and running WDL Dev Team pipelines in Cromwell: github.com/ecerami/wdl_sa…. Runs locally and via Google Cloud Genomics API. Actually got to do some real coding over the past few weeks...!










Nice overview of bioinformatics workflows definition and execution including discussion of Common Workflow Language project Galaxy Project and WDL Dev Team


Featuring WDL and Cromwell on Microsoft Azure thanks to Microsoft Microsoft for Healthcare -- see also our blog at software.broadinstitute.org/wdl/blog?id=24…. Come chat about it at the Broad Clinical Labs booth 714 if you're at #ASHG19 this week!


