protti: an R package for comprehensive data analysis of peptide- and protein-centric bottom-up proteomics data doi.org/10.1093/bioadv…

Very proud to announce that my first publication was just published in Bioinformatics Advances! Please check out the paper doi.org/10.1093/bioadv… Also check out our R package 📦: jpquast.github.io/protti/

Can someone explain why this solution is blue when light shines through it but red when light shines on it? My mind is blown! 🤯

If you are using protti please note that UniProt related functions are not working properly after the UniProt update. We implemented a quick fix which you can get now on GitHub.

It’s Niki’s 1st birthday today! 😼🎉 They grow up so fast! 🙀 #cat #birthdaygirl

So great to see this story out! Really proud to have been able to contribute to this amazing project during my time in the lab! Congrats to Max Valenstein, MD, PhD and @kbrogala for shedding light on the structure and function of GATOR2 a truly fascinating protein complex!

Super excited to share this collaborative work nature that focuses on the roles of Sestrin-mTORC1 in organismal dietary leucine response. So much fun working with Patrick Jouandin from Perrimon Lab. Thank all co-authors for their very valuable contributions.nature.com/articles/s4158…

A year ago we open-sourced #AlphaFold Today we're freely sharing the predicted structures of all 200M+ proteins known to science - almost the entire protein universe! It's our gift to humanity, and a demonstration of the benefits AI can bring to society dpmd.ai/AF-22-LI

Check out this really cool paper on the functional differences of RagA and RagB GTPase by the amazing @GLDaughter! Very happy I could contribute to this story during my time in the lab!

Check out our new protti release (0.5.0) here ➡️ jpquast.github.io/protti/ Jan-Philipp Quast was a busy 🐝, fixing some bugs and implementing the predict_alphafold_domain() function based on Tristan Croll‘s Python Code.

If you are doing proteomics combined with protein structure/prediction analysis please check out the vignette of our R package protti! Any feedback and suggestions are very welcome!

Big thanks to Brady Johnston for a great first #Blender workshop day! I learned a lot and could even already render a very simple but pretty animation! 🤩

Jan-Philipp Quast I've tried it in my Shiny app for qPCR analysis and seems impressive. Thank you. BTW, it fully supports facet_wrap().

Some people from the lab are at #HUPO2023 - make sure to stop by at their talks and posters if you want to know more about our work!

Recent protti updates 👩🏻‍💻 My former colleagues of the Picotti Lab Jan-Philipp Quast & Elena Krismer have been busy fixing bugs & implementing new features in our R package. Lots of improvements & additional arguments for more flexibility. Check them out here ⬇️ jpquast.github.io/protti/news/in…