📢 We are hiring! Postdoctoral position (18 months, Bordeaux, France) to analyze single cell transcriptomes in endoreduplicated cells from tomato pericarp. 🍅🧬 #singlecell #scRNAseq INRAE Nouvelle-Aquitaine Bordeaux INRAE Département BAP INRAE UMR1332 BFP More info 👇 jobs.inrae.fr/en/ot-21619

Gretl - Variation GRaph Evaluation TooLkit biorxiv.org/cgi/content/sh… #biorxiv_bioinfo

Post-doc recherché 24 mois. Etude de la réponse de la vigne à la contrainte sur le rayonnement incident dans le contexte de l’agrivoltaïsme et du changement climatique. Début 1er mai 2024. INRAE Métaprogramme ACCAF Plus d'infos sur jobs.inrae.fr/ot-21641

I've got a postdoc position open in my lab. Do you work on moss, single cell transcriptomics or plant developmental genomics? Consider applying for this position - more here: recruit.ucdavis.edu/JPF06360

🚨New Review! Grapes produced for wine-making are highly susceptible to changes in climate, such as extreme heat & drought 🍇🍷 This Review explores the changing geography of wine production and recommends adaptation measures for growers and consumers nature.com/articles/s4301…

Our review paper on "Genome assembly in the telomere-to-telomere era" published online in Nature Reviews Genetics. It amazes me how much assembly has progressed in the past four years – often ~100X improvement in contiguity and base accuracy and with haplotypes and hard regions resolved!

A special issue about Grapevine ! Please submit your manuscript ! INRAE Université de Bordeaux ISVV - Institut des Sciences de la Vigne et du Vin academic.oup.com/jxb/pages/spec…

I´m thrilled to see our #LRGASP paper published in Nature Methods today. This is the work of many to benchmark long-read methods for transcriptomics, and a must-read paper for those using lrRNA-seq. Special thnks to Francisco Pardo-Palacios and Brooks Lab (1/6) rdcu.be/dJ9ev

📢 We are looking for a motivated candidate for a fully funded #PhD to analyze the #transcriptome of polyploid cells from tomato fruit 🍅 at the single cell level #scRNAseq INRAE UMR1332 BFP Nathalie Gonzalez Info here 👇 jobs.inrae.fr/ot-22230

Our July issue is live! shorturl.at/t0D92 The cover image is from Dario Cantù (Dario Cantù), who reviews “the wild side” of GrapeGenomics. Recombination loss in sex chromosomes, functional genomics at scale, camouflage genetics, and more are also reviewed in the issue.

Our take on Trends in Genetics of the recent genomic research on wild grape species: a story of plant collection, diploid genomes, graph pangenomes, domestication, flower sex, biotic and abiotic stress resistance, and community data sharing GrapeGenomics - cell.com/trends/genetic…

We constructed a pangenome graph with #pggb Erik Garrison to crawl along the regions of the genomes where NLRs or pieces of NLRs are found at least in 1 accession UNTIL we found common (syntenic) anchors bordering those regions in all the accessions --> "NLR neighborhood"

Dear plant biologists - does anyone have Gellan Gum from Spectrum Chemical that they would be willing to share? We are doing a 10 month experiment and mid-way through the company will only now sell this in industrial quantities. If so - please DM me, pretty please!

🚨 Excited to share this #preprint from my postdoc in the Lippman lab Cold Spring Harbor Laboratory, in collab. with Michael Schatz & many others! Using pan-genomics & pan-genetics across the Solanum genus 🍅🥔🍆 we reveal gene duplications 🧬 as contingencies in crop engineering. doi.org/10.1101/2024.0…

We're hiring an Assistant Professor in Sensory Science to join the Viticulture and Enology department at UC Davis. recruit.ucdavis.edu/JPF06782

An atlas of conserved transcription factor binding sites reveals the cell type-resolved gene regulatory landscape of flowering plants biorxiv.org/cgi/content/sh… #biorxiv_genomic

If you're not yet "building #pangenome graphs" to analyze your #pangenomes, now is the time to start and unlock #pangenomics true power!

I'm excited to announce I am hiring! Together we can investigate how abiotic and biotic stress affect grafting! If you have any questions about working/living in China, please reach out.

New preprint from the lab biorxiv.org/content/10.110… describing the conservation of the grape sex determining region (SDR) across angiosperm genomes and detailed history within Vitaceae leading to dioecy in Vitis and Muscadinia. Collaboration with Jason P. Londo🏳️‍🌈🍇🍎shiversherlock.bsky.social

Proud of Conesa Lab and Marie Skłodowska-Curie Actions LongTREC amazing doctoral candidate Tianyuan Liu for this timely and comprehensive review on how #LongReadSequencing can profile the epigenome to reveal complex chromatin states. Published today in Nature Genetics. nature.com/articles/s4158…