ScType enables fast and accurate cell type identification from spatial transcriptomics data academic.oup.com/bioinformatics… #bioinformatics #feedly

scType Marker-based cell type annotation for #SpatialTranscriptomics Visium Slide-seq Use positive + negative markers (from scTypeDB database with previously scRNAseq-identified cell type markers or custom marker genes), instead of deconvolution. R & Python

The cost of developing a new pharmaceutical is around $1-3 billion. But is it possible to predict the likelihood of its approval? Yes. Extremely nice work on drug repurposing and drug approvals from Ianevski et al. Happy to have contributed. doi.org/10.1093/bib/bb…

Researchers at FIMM have developed an effective computational platform that automatically identifies cell types from #SpatialTranscriptomics data. The method holds great potential for understanding tissue organisation in both health and disease. 💻⬇️ helsinki.fi/en/hilife-hels…

Excited about multi-omics in health? We have a fully-funded PhD position on AI for multi-omics analytics as part of HIDDS4Health call 2024. Apply here: hidss4health.de

I'm looking for a PhD student to work on dendritic cell chemotaxis. Fully funded, application deadline 24th of Sep. Join our new lab in beautiful Turku Turun yliopisto - University of Turku. Lots of live cell imaging! More info (proj.2): sites.utu.fi/tohtorikoulutu… or DM. Please share 🙂

In case you are looking for an interesting/easy reading this weekend, how about some thoughts on in vitro human cell-based models cell.com/cell/abstract/… Cell Press Matthias Lutolf TAKEBE Takanori Laboratory

scTherapy, a novel machine learning approach from Tero Aittokallio and colleagues, leverages single-cell transcriptomic profiles to identify multi-targeting treatment options for individual patients with hematological cancers or solid tumors. helsinki.fi/en/hilife-hels…

👇🔬🧫Exciting story about human breast composition and 3D architecture in Cell Reports: cell.com/cell-reports/f…👇Led by Oona Paavolainen and Markus Peurla (Emilia Peuhu lab TurkuBioscience ) with help of Kamyab Saberi and Larissa Mourão CCB_VIB_KUL Department of Oncology - KU Leuven

A new study in Science #Immunology highlights how LIPSTIC, a proximity-based labeling method, can identify antigen-presenting #DendriticCells that activate #CD4+ TCells in the tumor and tumor-draining lymph nodes in mice. scim.ag/8pd Alex Chudnovskiy 🇺🇦 Victora Lab is at Bluesky

Fantastic work from our group: Single-cell profiling of patient tumours can inform effective and safe therapies nature.com/articles/s4146…

Job alert! Joint us in Heidelberg to develop and apply computational methods to dissect molecular variation in CRC cancer. #Postdoc #SpatialOmics #MultiOmics #AI Apply here: embl.org/jobs/position/…

A fully-funded PhD position around cancer-immune crosstalk and improving immunotherapies with data-driven multi-modal approaches. linkedin.com/pulse/fully-fu…

Join FIMM as a MSCA Doctoral Researcher, to work in the field of multiplexed immunofluorescence profiling of cancer metastases. This fully funded 4-year position in Teijo Pellinen's team is part of the #Mac4Me network. Apply by Nov 22 👇 jobs.helsinki.fi/job/Helsinki-M… #sciencejobs

🚨 Great alternatives to BioRender are now available!! 📢 NIAID News offers a collection of public figures and icons for everyone to use. Check it out at bioart.niaid.nih.gov

Signing a PDF

If you think the next big idea in your field will come from inside the field, you're probably wrong.

16 funded PhD positions in metastasis research adaptmet.eu/recruitment/

🚀 I’m on Bluesky! 🌌 If you’re into single-cell biology, bioinformatics, cancer or drug development, let’s connect! 🔬✨ Follow me here: bsky.app/profile/mitroe… #Bluesky #ScienceTwitter #SingleCell #Bioinformatics