Closing the lineup of our mtg with Adrian Mulholland and Rommie Amaro, advanced multiscale, version 23.0 ☺️👏👏 Top! #SBDD23

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Please take a few minutes to fill in our GROMACS user survey 2023 and help us better understand your needs, preferences, and identify ways to improve our support. ▶️Take the survey: bit.ly/42C0ikR

The #prin2022 proposal we wrote with Alessandra Magistrato was funded! For the next couple of years, expect classical and QM/MM simulations, integration of cryo-EM data, and enhanced sampling, working together to hunt metal ions in ribozymes and other dynamical #RNAs 🎉🥳🍾

#PLUMED 2.9.0 has been just released! This is a brand new release with many improvements

Our paper on simultaneous fitting of ensembles and forward models is out in The Journal of Chemical Physics 🥳!! doi.org/10.1063/5.0151… Congratulations Thorben Fröhlking Mattia Bernetti Giovanni Bussi . Summary 👇 still valid (though the post-review manuscript is much improved, including a better title!)

Our paper predicting cooperative effects in #RNA chemical probing experiments using grandcanonical #MD simulations has been published in JCIM & JCTC Journals doi.org/10.1021/acs.jc… 🥳Summary 👇is still valid! With Nicola Calonaci, Mattia Bernetti @Sattler_lab Giovanni Bussi

Our work presented today at the TSRC meeting on #RNA dynamics! Giovanni Bussi will show our ongoing projects integrating #MD, #NMR, #SAXS, #CryoEM, and #chemicalprobing to dissect conformational ensembles of our favorite biopolymer

Our work presented this week at #EBSA2023 session ‘Biophysics of #RNA and ribosomes’ on Wed morning at 8:30, room B. Valerio Piomponi will show how we use #MD, #NMR, and #SAXS to reconstruct the dynamics of A-to-I edited dsRNA. Collab with @Sattler_lab

Glad to had the opportunity to present part of my PhD work at the"Biophysics of RNA and ribosome" session of #EBSA2023. bussilab

Computational molecular medicine across three decades #CMM3D conference, celebrating the 60th birthday of Paolo Carloni, from 23 to 25 October, at SISSA Trieste, Italy! Group picture! 📸🖼️ SISSA cecam IBM EPFL Alessandra Magistrato Matteo Dal Peraro Marco De Vivo

Postdoc available in my lab starting Feb 2024 on elucidation of molecular interactions enabling effective antibacterial drug delivery. To apply through pica.cineca.it please see instructions here: dirpersonale.unica.it/concorsi/UserF… For info contact me at: [email protected]

Please retweet! Several PhD and Post-doc positions available in my lab to study #RNA structure ensembles in living cells! For enquiries, contact us at the address indicated on the flyer!

The registration deadline of the meeting "Emerging theoretical approaches to complement single-particle cryo-electron microscopy" is today! Join us in Trieste, Italy, with an outstanding list of speakers. biophysics.org/2024trieste#/ Pls RT & Apply !

Similarities and Differences in Ligand Binding to Protein and RNA Targets: The Case of Riboflavin #MolecularDynamics pubs.acs.org/doi/10.1021/ac… Stefano Bosio Mattia Bernetti Università di Bologna IIT #JCIM Vol64 Issue11 #PharamceuticalModeling

Two fully funded positions available: #PhD in Physics and Chemistry of Biological Systems SISSA SBP Sissa . Deadline Aug 26, h13:00 CET. Online application: pica.cineca.it/sissa/phd-phys… Exam (remote): Sep 9-10. More info ⬇️

Do you want to work at the interface of structural biology and #AI? We are #hiring Come to Paris for a CNRS 🌍 postdoc at Institut Pasteur, since 1887 funded by European Research Council (ERC) and co-supervised by @malletvincent Please RT!! #deeplearning #compbio More info here: research.pasteur.fr/b/vVT

Please retweet 🙏: 2 European Research Council (ERC)-funded Post-doc positions are available in our lab to investigate #RNA structural ensemble and their dynamics in living cells. Application link: rug.nl/about-ug/work-…

Do you want to work at the interface of molecular simulations, structural biology experiments and #AI? Come to Paris for a PhD at Institut Pasteur, since 1887. 1 PhD position is available in our lab funded by European Research Council (ERC). Please repost!! #compchem #compbio Info 👇 research.pasteur.fr/b/15Hr

📢 New #preprint describing our community effort to share #plumed tutorials arxiv.org/abs/2412.03595 ! Explore the tutorials at plumed-tutorials.org