Mark Gerstein (@markgerstein) 's Twitter Profile
Mark Gerstein

@markgerstein

#Bioinformatics professor, interested in #DataScience, with photography, triathlons & non-fiction books as hobbies

ID: 230944453

linkhttp://Gerstein.info calendar_today27-12-2010 04:31:33

6,6K Tweet

7,7K Followers

866 Following

Hao Yin (@haoyin20) 's Twitter Profile Photo

ASTRO Automated Spatial Whole-Transcriptome RNA-Expression wOrkflow for Patho-DBiT #SpatialRNAEncyclopedia coding + noncoding RNAs github.com/gersteinlab/AS… Data👤mucosa-associated lymphoid tissue 👤lymph node 🐭embryos vs ST-pipeline Establishment of a non-coding RNA reference

ASTRO
Automated Spatial Whole-Transcriptome RNA-Expression wOrkflow
for Patho-DBiT
#SpatialRNAEncyclopedia
coding + noncoding RNAs

github.com/gersteinlab/AS…

Data👤mucosa-associated lymphoid tissue 👤lymph node 🐭embryos

vs ST-pipeline

Establishment of a non-coding RNA reference
Yale MB&B (@yalembb) 's Twitter Profile Photo

We are excited to announce a tenure-track or tenured faculty position in Computational Biophysics and Biochemistry, exploring the intricate molecular and cellular processes and the complex interactions of their macromolecular components! Apply now at apply.interfolio.com/162132

We are excited to announce a tenure-track or tenured faculty position in Computational Biophysics and Biochemistry, exploring the intricate molecular and cellular processes and the complex interactions of their macromolecular components!

Apply now at apply.interfolio.com/162132
Rob Tang (@xiangrutang) 's Twitter Profile Photo

Happy to announce our paper has been accepted at #ICLR2025! 🎉 "ChemAgent: Self-updating Library in LLMs Improves Chemical Reasoning" 📈 Significant improvements across multiple LLMs: - GPT-4: +37% avg accuracy, up to +46% on CHEMMC (SciBench) - Llama3-70B: +13% improvement -

Happy to announce our paper has been accepted at #ICLR2025! 🎉
"ChemAgent: Self-updating Library in LLMs Improves Chemical Reasoning" 

📈 Significant improvements across multiple LLMs:

- GPT-4: +37% avg accuracy, up to +46% on CHEMMC (SciBench)
- Llama3-70B: +13% improvement
-
Gerstein Lab | Yale (@gersteinlab) 's Twitter Profile Photo

New Physical Review A paper by Gaoyuan Wang, Jonathan Warrell, Prashant Emani and Mark Gerstein ! Check out our new model QVAE, a fully quantum variational autoencoder with latent regularization: journals.aps.org/pra/abstract/1…

New <a href="/PhysRevA/">Physical Review A</a> paper by Gaoyuan Wang, Jonathan Warrell, Prashant Emani and <a href="/MarkGerstein/">Mark Gerstein</a> ! Check out our new model QVAE, a fully quantum variational autoencoder with latent regularization: journals.aps.org/pra/abstract/1…
Rob Tang (@xiangrutang) 's Twitter Profile Photo

Excited to attend #ICLR2025! 🇸🇬 😀find me at ① 3 - 5:30 p.m., Fri 25 Apr (Hall 3 + Hall 2B #8). I will present ChemAgent as a poster. ② 4:30 - 4:45 p.m., Sun 27 Apr. Agentic AI for Scientific Discovery Workshop. I will be on the job market. Feel free to contact me and chat!

Excited to attend #ICLR2025! 🇸🇬 
😀find me at
① 3 - 5:30 p.m., Fri 25 Apr  (Hall 3 + Hall 2B #8). I will present ChemAgent as a poster. 
② 4:30 - 4:45 p.m., Sun 27 Apr. Agentic AI for Scientific Discovery Workshop. 
I will be on the job market. Feel free to contact me and chat!
Mark Gerstein (@markgerstein) 's Twitter Profile Photo

Thoughts on Carl Zimmer's Airborne blog.gerstein.info/2025/04/though… Great book about an overlooked mode of disease transmission, now prominent because of the pandemic

Thoughts on <a href="/CarlZimmer/">Carl Zimmer</a>'s Airborne blog.gerstein.info/2025/04/though… Great book about an overlooked mode of disease transmission, now prominent because of the pandemic
Gerstein Lab | Yale (@gersteinlab) 's Twitter Profile Photo

New Biophysical Journal paper by Alan Ianeselli, Joe Howard and Mark Gerstein . A Molecular Dynamics algorithm to rapidly compute protein folding pathways and identify folding intermediates for targeted drug discovery! doi.org/10.1016/j.bpj.…

New <a href="/BiophysJ/">Biophysical Journal</a> paper by Alan Ianeselli, Joe Howard and <a href="/MarkGerstein/">Mark Gerstein</a> . A Molecular Dynamics algorithm to rapidly compute protein folding pathways and identify folding intermediates for targeted drug discovery! doi.org/10.1016/j.bpj.…
Gerstein Lab | Yale (@gersteinlab) 's Twitter Profile Photo

Our new paper in @jbi_journal describes the iDASH-winning method for efficient blockchain storage of biomedical data. We cut gas costs by 60% and sped up retrieval 500x with low-level Solidity optimization. By Eric Ni, Elizabeth Knight, Mark Gerstein doi.org/10.1016/j.jbi.…

Our new paper in @jbi_journal describes the iDASH-winning method for efficient blockchain storage of biomedical data. We cut gas costs by 60% and sped up retrieval 500x with low-level Solidity optimization.
By Eric Ni, Elizabeth Knight, <a href="/MarkGerstein/">Mark Gerstein</a>
doi.org/10.1016/j.jbi.…
Gerstein Lab | Yale (@gersteinlab) 's Twitter Profile Photo

1/4 🚀 New #ICLR2025 SPOTLIGHT ALERT Gerstein Lab presents “Enhancing the Scalability & Applicability of Kohn-Sham Hamiltonians”—led by  Yunyang & Z Xia & L Huang & J Zhang & Mark Gerstein. Joint work with Microsoft Research.

1/4 🚀 New #ICLR2025 SPOTLIGHT ALERT
Gerstein Lab presents “Enhancing the Scalability &amp; Applicability of Kohn-Sham Hamiltonians”—led by  <a href="/_YunyangLI/">Yunyang</a> &amp; Z Xia &amp; L Huang &amp; J Zhang &amp; <a href="/MarkGerstein/">Mark Gerstein</a>. Joint work with <a href="/MSFTResearch/">Microsoft Research</a>.
Mark Gerstein (@markgerstein) 's Twitter Profile Photo

Posting my talk tomorrow for the Frontiers in Computational Biosciences series at UCLA lectures.gersteinlab.org/summary/Better…. Lots of new slides on creating digital phenotypes from wearable devices & relating them to genetics (from Jason Liu & SusannaXLiu) and on quantum computing ,

Posting my talk tomorrow for the Frontiers in Computational Biosciences series at <a href="/UCLA/">UCLA</a> lectures.gersteinlab.org/summary/Better…. Lots of new slides on creating digital phenotypes from wearable devices &amp; relating them to genetics (from <a href="/JasonJLiu/">Jason Liu</a> &amp; <a href="/Susannaliu99/">SusannaXLiu</a>) and on quantum computing 
,
Mark Gerstein (@markgerstein) 's Twitter Profile Photo

Posting my talk on Tue. at UCI Center for Neural Circuit Mapping (hosted by JingZhang) lectures.gersteinlab.org/summary/SCZ-AD… . Lots of slides on using AI approaches for Schizophrenia, Alzheimer's & ADHD, including some new ones on analyzing AD imaging.

Posting my talk on Tue. at <a href="/UCI_NeurCircuit/">UCI Center for Neural Circuit Mapping</a> (hosted by <a href="/JingZhang_bio/">JingZhang</a>) lectures.gersteinlab.org/summary/SCZ-AD… . Lots of slides on using AI approaches for Schizophrenia, Alzheimer's &amp; ADHD, including some new ones on analyzing AD imaging.
Yale Ventures (@yale_ventures) 's Twitter Profile Photo

📣 200+ Innovators Presenting at the 2025 Yale Innovation Summit 📣 Meet the founders who will compete for $300k in prizes during 6 live pitch sessions, interactive ePoster presentations, and virtual showcases at #YaleInnovation2025 👉 bit.ly/3GKJ0Mk

📣 200+ Innovators Presenting at the 2025 Yale Innovation Summit 📣

Meet the founders who will compete for $300k in prizes during 6 live pitch sessions, interactive ePoster presentations, and virtual showcases at #YaleInnovation2025 👉 bit.ly/3GKJ0Mk
Mark Gerstein (@markgerstein) 's Twitter Profile Photo

Posting my talk tomorrow at the @BroadInstitute's Stanley Center lectures.gersteinlab.org/summary/Explor… Exploring Intermediate Endophenotypes connecting Genotype to Diseases (new slides from Jason Liu & some artwork from SusannaXLiu)

Posting my talk tomorrow at the @BroadInstitute's <a href="/StanleyCenter/">Stanley Center</a> lectures.gersteinlab.org/summary/Explor… Exploring Intermediate Endophenotypes connecting Genotype to Diseases (new slides from <a href="/JasonJLiu/">Jason Liu</a> &amp; some artwork from <a href="/Susannaliu99/">SusannaXLiu</a>)