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Out today! Pycro-Manager: open-source software for customized and reproducible microscope control. nature.com/articles/s4159…

Fresh on the heels of Micro-Manager 2.0, we are happy to announce a completely revamped micro-manager website at micro-manager.org. Great work by the Kevin Eliceiri group, you will recognize elements of the imagej net design.

A cool looking napari🔬 interface to micro-manager using pycro-manager:

And Talley Lambert's and co-workers napari🔬 micro-manager plugin using pymmcore directly

napari-micromanager is coming along thanks to amazing work from Federico Gasparoli (& help from Ian (lover of wild turkeys)!). w/ working micro-manager property browser, illumination and ROI control, and a multi-D acquisition widget... all python and C++ with pymmcore 🎉 github.com/tlambert03/nap…

Seem an appropriate cue to announce a MM2 plugin "LightSheetManager" to provide an easy interface to all light sheet microscopes, be they custom-built or from commercial parts. CC Bin Yang @DougPShepherd Kay Schink Marijn Siemons Maurice Lee Shalin Mehta OpenSPIM

Real-time segmentation of fibroblasts allows us to grow actin skeleton in a specified direction! Cells built @Pertzlab express optogenetic construct to activate RAC. We use micro-manager and napari🔬 to train a pixel classifier for segmentation on live data from scope. 🧵

Thanks to Mark Tsuchida you can now install Micro-Manager Python bindings using: conda install -c conda-forge pymmcore

Our MicroMator paper on software to support reactive microscopy is published in Nature Communications. nature.com/articles/s4146… Big thanks to Zach Fox, @twitoSebas, François Bertaux and others at Inria and Institut Pasteur, since 1887.

An Acquisition and Training Module based on micro-manager for straightforward transformation of basic fluorescence microscopes into experimental cell mechanics rigs: pubag.nal.usda.gov/catalog/7692598

Microscope objectives can be confusing, and detailed specs (or even basic properties) are often hard to find. Here's an introductory resource to help new builders and instrument designers with the basics. It's a work in progress so feedback is appreciated: amsikking.github.io/microscope_obj…

Neat microscope auto-focus system that works with Micro-Manager: biorxiv.org/content/10.110…

Instant molecular orientation imaging using a Thorlabs camera and Micro-Manager: biorxiv.org/content/10.110…