The amount of papers being published every week in spatial trascriptomics is disproportionate to the amount I can read in a week... However, one can find real gems in "lower level" journals. You just have to find the time to really dig through the pile of publications...

SpaRx Predict (Spatial) drug responses of tumors using single-cell-resolved #SpatialTranscriptomics #CosMx Lung cancer #MERSCOPE Trained on GDSC CCLE cell line (>1k) drug screening database Graph-based Adversarial adaptation @BriefingBioinfo 2023 academic.oup.com/bib/article/24…

I see we are getting to the stage of the discussion where people are starting to defend UMAP saying it can 'reveal patterns' or 'structure' in the data. Without ever specifying what precisely these patterns/structures represent. This is not surprising because hardly anybody 1/n

Molecular & Spatial Signatures of🐭Embryonic Endothelial Cells at Single-Cell Resolution e9.5/12.5/15.5 #ArterioVenousHierarchy & #Organotypicity of Embryonic #EndothelialCell scRNAseq #MERFISH #SpatialTranscriptomics #SciArt William Pu lab Circulation Research 2024

TransformerST #SpatialTranscriptomics Vision transformer Adaptive graph transformer Cross-scale internal graph network Image-gene co-representation: Gene expression+Spatial coordinates+Histologic images "could achieve super-resolved resolution of a single cell per subspot" w/o

SpatialData spatialdata.scverse.org/en/latest/ Establish a global common coordinate framework-> Multi-modal #SpatialOmics integration Align multislice for 3D #SpatialOmics napari-spatialdata Work with (RNA) Visium Xenium CosMx MEFISH (protein) CycIF MIBI-TOF #ImagingMassCytometry +HE

STCellbin Use Nuclei+Cell Membrane/Wall stains to improve #CellSegmentation & single-cell-resolved #SpatialTranscriptomics Tailored for #StereoSeq, but likely implementable for other ST methods Susanne Brix & Xun Xu labs GigaByteJournal 2024 gigabytejournal.com/articles/110

It is always great to share knowledge with fellow researchers and gather important feedback! Thank you for hosting me! #SpatialTranscriptomics

Olympiakos in the final!!! 💪💪

Pleased to share our new Research highlights article, which summarizes some of the core features and applications of the BANKSY spatial omics algo. Viewable via: rdcu.be/dH1mz ! Thanks Nigel Chou Nature Reviews Genetics Shyam Prabhakar Lab Kok Hao Chen Lab A*STAR Genome Institute of Singapore (A*STAR GIS)!

STT: Spatial transition tensor of single cells nature.com/articles/s4159…

#BGI-Research's cutting-edge liver studies have been selected as the cover story for Nature Genetics . These two studies integrate scRNA-seq and Stereo-seq data to characterize molecular signatures and interactions of liver cell types across different states including homeostasis,

gganatogram: An R package for modular visualisation of anatograms and tissues based on ggplot2 Draw Animal/Plant organs or some cell organelles in R github.com/jespermaag/gga… Jesper Maag F1000Research 2018 f1000research.com/articles/7-157…

Olympiacos. History makers 👏 The first Greek side to win a UEFA club competition 💫 John Sheehan x #UECLfinal

ΝΑΙ ΡΕ ΘΡΥΛΕ!!! 🔴⚪🏆🇬🇷

WE ARE THE @europacnfleague WINNERS! WE ARE THE CHAMPIONS! 🔴⚪🏆🇬🇷 #Olympiacos #UECL #Champion #Winners #Europe #Greece #WeKeepOnDreaming

What is a cell type and how to define it? #DevoEvo Linking morphologic, geographic & functional attributes with Transcriptomic/Epigenomic taxonomy Connectomics Path-seq Retro-seq ...... How many neuron omic techniques have been/can be adapted for microvasculature?😆

𝗦𝗧𝗔𝗠𝗣: single cell (spatial?) Being asked what I think about it (NOT involved). 1) What is STAMP? Should I care about it? STAMP is a clever way of using 𝘀𝗽𝗮𝘁𝗶𝗮𝗹 𝗮𝘀𝘀𝗮𝘆𝘀 to get 𝗶𝗻𝘀𝗮𝗻𝗲𝗹𝘆 𝗹𝗼𝘄 𝗰𝗼𝘀𝘁 𝘀𝗶𝗻𝗴𝗹𝗲 𝗰𝗲𝗹𝗹 𝗱𝗮𝘁𝗮 tinyurl.com/nwetc3te

**Please Retweet (Re-X?)** 🔥Postdoc #jobs in Spatial / Single Cell Omics Looking to become a #leader in #SpatialBiology? Love NGS & #MachineLearning? #Positions Harvard Medical School Broad Institute linkedin.com/jobs/view/4038… #hiring #lab #boston #research #aiml #biotech #Science