Lars Borm
@larsborm
Postdoc at Stein Aerts lab, smFISH of the non-swimming kind. Building and tinkering.
ID: 919866187164635136
16-10-2017 10:02:44
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So excited to announce our new method for multiplexed RNA imaging in bacterial cells: bacterial-MERFISH! A huge congratulations to the team of Ari Sarfatis, Yuanyou Wang, and Nana Twumasi-Ankrah! Check out the following thread or our bioRxiv (biorxiv.org/content/10.110โฆ) 1/12
A great DIY guide for image-based spatial transcriptomic from Florian Mueller and team at Institut Pasteur, since 1887 biorxiv.org/content/10.110โฆ
๐บ Introducing Nova-ST, a new open-source platform for high-resolution spatial transcriptomics! โก Developed in the @steinaerts lab, Nova-ST will make large-scale, high-resolution spatial tissue analysis more accessible and affordable. Find out more โก๏ธ cbd.sites.vib.be/en/news#/news/โฆ
๐จ๐๐ ๐๐๐ job opportunity UC San Francisco ๐จ: I'm hiring TWO postdocs - an experimentalist and a computational biologist. Join us to use cutting-edge single-cell and spatial technologies to unravel the mysteries of human tissues. opportunities.ucsf.edu/content/open-pโฆ
๐ Exciting news! Our latest work is now published in Development! The open-source solution for RNA-targeted in situ sequencing provides an accessible and efficient method for spatially resolved gene expression analysis and spatial multi-omics. ๐ doi.org/10.1242/dev.20โฆ
Interested in navigating #metabolism in space and time? Meet uMAIA (the Unified Mass Imaging Analyzer) - a framework developed in collaboration with Giovanni D'Angelo & oaties EPFL Life Sciences led by Halima Hannah Schede & Leila #omics #lipidtime #MALDI biorxiv.org/content/10.110โฆ 1/N
Our paper โWhole-embryo Spatial Transcriptomics at Subcellular Resolution from Gastrulation to Organogenesisโ is now on biorxiv! We introduce weMERFISH, a platform for profiling gene expression in entire embryos at subcellular resolution. Here is๐งตbiorxiv.org/content/10.110โฆ (1/12)
Long awaited (thanks James Manton for posting the patent application!) and now out in Science Magazine: Using absorption to look deeper by HongLab - they achieved approx. 3 mm depth using the food dye tartrazine: #Microscopy science.org/doi/10.1126/scโฆ
7 years ago, I met a junior fellow named Jason Buenrostro who blew me away with a vision of futuristic genomic technologies Today, we (Ajay Labade, @carolinecomenho) are excited to share our first steps into that future: Expansion in situ genome sequencing 1/
our work on vitessce is out in Nature Methods!
Thrilled to report Patho-DBiT, just published in Cell ๐. It allows us to directly โseeโ all kinds of RNA species on the same clinical FFPE tissue slide, including mRNA, miRNA, snRNA, snoRNA, tRNA, etc, and splicing isoforms, genetic alterations (SNV, CNV, etc). Really a fun,
STAMP: Single-Cell Transcriptomics Analysis and Multimodal Profiling through Imaging | bioRxiv โฆDr. Jasmine Plummer ๐ฉ๐ปโ๐ฌ๐งฌ๐จ๐ฆ๐บ๐ธโฉ โฆHolger Heynโฉ โฆ@pascual_reguantโฉ โฆ@eliseinsingโฉ โฆCNAGโฉ โฆAdelaide Centre for Epigeneticsโฉ โฆSt. Jude Researchโฉ biorxiv.org/content/10.110โฆ
We are thrilled to share that our first paper from my new lab, Spateo (github.com/aristoteleo/spโฆ) for spatiotemporal modeling of molecular holograms, is now online in Cell: cell.com/cell/fulltext/โฆ. Spateo is a comprehensive analytical framework for 3D whole-embryo spatiotemporal
