Bioinformatics Copilot 1.0: A Large Language Model-powered Software for the Analysis of Transcriptomic Data biorxiv.org/cgi/content/sh… #biorxiv_bioinfo

May is Cystic Fibrosis Awareness Month!

Many #GenomeBrowsers only show one #genome assembly at a time. NCBI presents a new visualization tool called the #ComparativeGenomeViewer (#CGV) that aids in pairwise comparison of whole-genome eukaryotic assembly-assembly alignments #PLOSBiology plos.io/3QYDtUP

UK toddler has hearing restored in world first gene therapy trial dlvr.it/T6czMY

"Empowering bioinformatics communities with Nextflow and nf-core" #Nextflow #Pipelines biorxiv.org/content/10.110…

#Pediatric #Cancer "From a pan-cancer perspective"

Three scientist mothers call for a change in how conference childcare costs are reimbursed, drawing on their personal experiences go.nature.com/3KfWZIB

🧹🤩 #tidyomics made it to Nature Methods! "The tidyomics ecosystem: Enhancing omic data analyses", 👏🏽, William Hutchison, Timothée Keyes, PhD, and Team! 32 researchers | 26 institutes | 10 countries | 4 continents A #crowd/#community-research success nature.com/articles/s4159… CZI Science

#LLMs This paper proposed guidelines and principles for assessing trustworthiness of LLMs spanning 8 dimensions, evaluated 16 LLMs and considered over 30 datasets. "TrustLLM: Trustworthiness in Large Language Models" : arxiv.org/abs/2401.05561 URL: trustllmbenchmark.github.io/TrustLLM-Websi…

A Perspective from @itisalist Judith Bernett Roman Joeres ok Florian Haselbeck Dominik Grimm @bit_tumcs & David B. Blumenthal discusses the issue of data leakage in machine learning models and presents 7 questions to identify and avoid problems as a result. nature.com/articles/s4159…

As part of GREGoR Consortium , we are excited to announce new guidance to encourage clinical labs to report novel candidate genes during clinical testing. We give criteria for triaging, sharing, and reporting novel genes through various methods. authors.elsevier.com/c/1jcDA3vlFV4E…

Big 🙏 to Sara Reardon and nature for this article outlining a 30-year conflict, and to Carl Elliott for kind comments. Still working to "take the b*stards down."😂 nature.com/articles/d4158… #accountability #coverup #PatientSafety #PharmaCrime #whistleblowers #misconduct

Grim. In 🇨🇦, selling your body for #Pharma is easy. It's called "risk management." Patients' risk. Pharma's management - and profits. thestar.com/news/investiga… 🙏 to Trudo Lemmens and Carl Elliott, who wrote about this years ago... 1/

Exciting times ahead! Computational researchers are finally being recognized at this level during their careers; breaking traditional barriers! 🚀 #ComputationalBiology #MachineLearning #DataDriven

Read our statement about an article in The Guardian about potential misuse of UK Biobank data: ow.ly/Z35s50TNSXW

Had a great experience presenting on "Integrative genomic characterization of a rare pediatric differentiated thyroid cancer” at CSHL-Biological Data Science Meeting #cshldata24 #biodata24 bit.ly/4hUv1BO Thanks to all collaborators; GREGoR Consortium for travel support!

"Cancer genomicist Melissa B. Davis on surrounding yourself with supportive mentors and allies" Read our interview with Morehouse School of Medicine Dr. Melissa B. Davis, one of our #50ScientistsThatInspire: cell.com/news-do/50-ins…

A concise comparison of caret, tidymodels, mlr3, and fastml across key ML features in R.

🚀 DeepSeek-R1 is here! ⚡ Performance on par with OpenAI-o1 📖 Fully open-source model & technical report 🏆 MIT licensed: Distill & commercialize freely! 🌐 Website & API are live now! Try DeepThink at chat.deepseek.com today! 🐋 1/n

Historic day for builders in bio: We’ve open-sourced Vevo Therapeutics’s #Tahoe100M, largest single-cell atlas ever—by a wide margin—as the inaugural contribution to Arc Institute’s Virtual Cell Atlas, ready for download today. A leap forward for AI models of cells & drug discovery. 🧵